| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rmet_1584 |
|---|
| Symbol | |
|---|
| ID | 4038387 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Cupriavidus metallidurans CH34 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007973 |
|---|
| Strand | - |
|---|
| Start bp | 1704945 |
|---|
| End bp | 1706138 |
|---|
| Gene Length | 1194 bp |
|---|
| Protein Length | 397 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 637976968 |
|---|
| Product | methylitaconate delta2-delta3-isomerase |
|---|
| Protein accession | YP_583736 |
|---|
| Protein GI | 94310526 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG2828] Uncharacterized protein conserved in bacteria |
|---|
| TIGRFAM ID | [TIGR02334] probable AcnD-accessory protein PrpF |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.00480301 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 0.705839 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCACATG TACCCCAAAT CAGGATTCCC GCCACCTACA TGCGTGGCGG TACCAGCAAG
GGCGTGTTCT TCCGGGTGCA GGACCTGCCA GAGGCTGCGC AGGTCCCGGG CAAGGCGCGC
GACGCGCTGC TGATGCGCGT GATCGGCAGC CCCGATCCGT ACGGCAAGCA GATCGACGGC
ATGGGCGCGG CCACCTCGAG TACCAGCAAG ACCGTGCTGA TCTCGAAGAG CACCCGCCCG
GACCACGACG TCGACTATTT GTTCGGGCAG GTGTCGATCG ACCAGCCGTT CGTAGACTGG
AGCGGCAACT GCGGCAACCT GTCGGCGGCG GTCGGTCCGT ACGCGATCAG CAACGGCTTC
ATCGACGCGG CGCGCATTCC CGAGAACGGC ACGGTGACGG TCCGGATCTG GCAAGCGAAC
ATCGGCAAGA CCATCATCTC GCACGTGCCG ATCACCAACG GCGCGGTGCA GGAAACGGGC
GACTTCGAGC TCGACGGCGT CACGTTCCCC GCGGCCGAAG TCCAGCTCGA GTTCATGGAT
CCGGCCGCCG AGGAAGGCGA TGACGGTGGC GGCGCGATGT TCCCGACCGG TAACCTCGTC
GATGACCTCG AAGTGCCCGG CGTCGGCACG CTCAAGGCCA CGATGATCAA TGCCGGCATT
CCGACGATCT TCGTCAATGC GGAGGCCATC GGCTACACCG GCACGGAACT GCAGGAAGCC
ATCAACGGCG ACCCGAAGGC GCTGGCGATG TTCGAGACCA TCCGTGCCTA TGGCGCCAAG
CGCATGGGCC TGATCCGCGA CATCGACGAA GCCGCGCGTC GCCAGCACAC GCCGAAGGTG
GCGTTCGTGG CGAAGCCGGC GACGTACACG GCATCGAGCG GCAAGACCGT CAATGCCGGC
GACGTGGACC TGCTGGTGCG TGCGCTGTCG ATGGGCAAGC TGCACCATGC GATGATGGGC
ACCGCTGCGG TGGCCATCGG CACGGCGGCT GCAGTACCGG GCACGCTGGT GAACCTGGCG
GCCGGCGGCG GCGAACGCGA GGCAGTGCGT TTCGGCCACC CATCCGGCAC GCTGCGTGTG
GGCGCGCAGG CCGTCCAGTC CGACGGTGAA TGGACCGTGA CGAAGGCCAT CATGAGCCGC
AGTGCACGCG TGTTGATGGA AGGCTGGGTT CGCATACCGG GCGACGCGTT CTAA
|
|---|
| Protein sequence | MAHVPQIRIP ATYMRGGTSK GVFFRVQDLP EAAQVPGKAR DALLMRVIGS PDPYGKQIDG
MGAATSSTSK TVLISKSTRP DHDVDYLFGQ VSIDQPFVDW SGNCGNLSAA VGPYAISNGF
IDAARIPENG TVTVRIWQAN IGKTIISHVP ITNGAVQETG DFELDGVTFP AAEVQLEFMD
PAAEEGDDGG GAMFPTGNLV DDLEVPGVGT LKATMINAGI PTIFVNAEAI GYTGTELQEA
INGDPKALAM FETIRAYGAK RMGLIRDIDE AARRQHTPKV AFVAKPATYT ASSGKTVNAG
DVDLLVRALS MGKLHHAMMG TAAVAIGTAA AVPGTLVNLA AGGGEREAVR FGHPSGTLRV
GAQAVQSDGE WTVTKAIMSR SARVLMEGWV RIPGDAF
|
|---|
| |