| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rmet_1556 |
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| Symbol | |
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| ID | 4038359 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Cupriavidus metallidurans CH34 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007973 |
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| Strand | + |
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| Start bp | 1677817 |
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| End bp | 1679202 |
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| Gene Length | 1386 bp |
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| Protein Length | 461 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 637976940 |
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| Product | conjugal transfer protein TrbL |
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| Protein accession | YP_583708 |
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| Protein GI | 94310498 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3846] Type IV secretory pathway, TrbL components |
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| TIGRFAM ID | [TIGR02783] P-type conjugative transfer protein TrbL |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.000247967 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 19 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAATGACG TGACCATCAT CGACCAGTTC CTGAACACCT TTTCCACCTA CATCGACTCG
GGTTTCGGGC TGCTGCGGGG CGAAGTGGCG TTCCTCACGG CCACGCTGAT CGTCATCGAC
ATGACGATCG CCGGCCTGTA TTGGGCCATG AGCCATGCCA CCGGCCAGGG CGAGGACGTG
ATCGCCAAGC TGCTGCGCAA GGTGCTCTAC GTCGGTGCCT TCGCCTACAT CATCAACAAC
TTCAACTGGC TGGCCGGCAT CGTCTTCCGA TCCTTTGCCG GACTGGGCAT CACCGCCACC
GGCTCGGCCA TCACGATGGG GAACTTCTTG CAGCCGGGCC GGTTGGCGAA AGCCGGCATC
GACGCCGGGG CGCCGATCCT GAAGCAGATC GGCAAGATGG CGGGCTTCCC CGAAGTGTTC
GTGAACCTCG ACCCCATCGT GGTGATGTTC CTCGCCTGGC TGGTTGTGGT GTTGTGCTTC
TTCGTGCTGG CGATCCAGCT TTTCATCACG CTGATCGAAT TCAAGCTGAC CACGCTGGCG
GGCTTCGTGC TGGTGCCGTT CGCGCTGTGG AACAAGACCA GCTTCCTGGC CGAGAAGGTG
CTGGGCAACG TGGTATCCGC CGGCGTCAAG GTGCTGGTGC TGGCCGTGAT CGTCGGTATC
GGCTCGGGCT TGTTCGCTCA GTTCCAAGTC CATCCCGCCG AGCCGTCCAT CGACCATGCG
CTGGTCATCA TGCTGGCCTC GCTCACCTTG CTGGCGCTTG GGATCTTCGG CCCCGGCATC
GCCACGGGCC TCGTCTCCGG TGCGCCACAG CTCGGCGCGG GCGCAATGGC CGGTGCTGCT
GTCGGCGCTG CCGGCACCGC CGTCGCCATC GGCGCCGCCG CGACGGGCGT GGGTGGCGCC
GTGGCTGCTG GCGCTCGCAT GGCCCCGGCT GCCGCCAAGC TGGCCGGTAG CGGCGCGCGC
GCCGCCACGT CGGCGGCCAG CAGTGCGAAG TCGGCGTTTC AGGCCGGTTC CGCCGCCGCT
GGCGGCGGCG CGAAGGGCGC GATGGCGGGC CTGGGCAATG TCGCCAAGAC AGGCGCGCAG
TCGGCCGGAC GCGCGGCTGT GTCGCGTGCT TCCGCTGCCG GGCAGCGAAT GGCAGCTCCA
TTCCGCGCTG GCTGGAATGG CCCGGCCGCT GACTCTGGCG CGACAGCCGG CGGAGCCGGG
GCATCCGGCC AGGCCGCAAC AGGCGAAGCC ACTTCCGGCG CAGCCAACGC GCAACCCGCC
TGGGCCAAGC GGCTGCATCG CCGCCAGCAA CTCACCCATG CCGCGACCAC CACCGCCCAC
ACGCTGCGCG GTGGCGATGG CGGCGGCTCC GGCCAGGGGC CGAGCCTGCG CGATTCCGAT
TCATAA
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| Protein sequence | MNDVTIIDQF LNTFSTYIDS GFGLLRGEVA FLTATLIVID MTIAGLYWAM SHATGQGEDV
IAKLLRKVLY VGAFAYIINN FNWLAGIVFR SFAGLGITAT GSAITMGNFL QPGRLAKAGI
DAGAPILKQI GKMAGFPEVF VNLDPIVVMF LAWLVVVLCF FVLAIQLFIT LIEFKLTTLA
GFVLVPFALW NKTSFLAEKV LGNVVSAGVK VLVLAVIVGI GSGLFAQFQV HPAEPSIDHA
LVIMLASLTL LALGIFGPGI ATGLVSGAPQ LGAGAMAGAA VGAAGTAVAI GAAATGVGGA
VAAGARMAPA AAKLAGSGAR AATSAASSAK SAFQAGSAAA GGGAKGAMAG LGNVAKTGAQ
SAGRAAVSRA SAAGQRMAAP FRAGWNGPAA DSGATAGGAG ASGQAATGEA TSGAANAQPA
WAKRLHRRQQ LTHAATTTAH TLRGGDGGGS GQGPSLRDSD S
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