Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rmet_1553 |
Symbol | |
ID | 4038356 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Cupriavidus metallidurans CH34 |
Kingdom | Bacteria |
Replicon accession | NC_007973 |
Strand | + |
Start bp | 1674324 |
End bp | 1676753 |
Gene Length | 2430 bp |
Protein Length | 809 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 637976937 |
Product | conjugal transfer ATPase TrbE |
Protein accession | YP_583705 |
Protein GI | 94310495 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG3451] Type IV secretory pathway, VirB4 components |
TIGRFAM ID | [TIGR00929] type IV secretion/conjugal transfer ATPase, VirB4 family |
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Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 0.215631 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 17 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCTGAACC TCGCCGAATA CCGCCAGCGC CCGGCCTTGC TTGCCGACTG GCTGCCCTGG GCCGGACTGG TCGCGCCGGG CATCGTCTTG AACAAGGACG GCAGTTTCCA GCGCACGGCC CGGTTTCGCG GGCCTGACCT CGACAGCGCG ACGCAAGGCG AGCTGATTGC CACGTCGGCA CGGCTGAACA ACGCATTGCG CCGGCTGGGT TCTGGCTGGG CCTTGTTCAT CGAGGCCGAG CGCCGCGCCG CTGCCGACTA TCCGCGCTCG GAGTTTCCCG AGCCGCTTTC GTGGGTGGTG GAGGAAGAAC GCCGGGCCGC CTTCGAGGAC TCGGGCAATC ACTTCGAGAG CGGCTACCAC CTGACGCTGC TTTACCTGCC GCCGGAAGAA TCCCGCGCCC GTGCAGCCAA GATGCTCTAC GAGAACACGC CGACGAATGG CGTGGACTGG CGCGAGCGGC TGCAAGCCTT CGTCGCGGAA ACGGATCGCG TCTTTGACCT GCTCGACGGC GTGATGCCGG AAGTTGACTG GCTCGATGAC GCGCAGACGC TGACCTACCT GCACGCGACC ATCTCGACGC GGCGCTATTC GCTGGCGGTG CCCGAAGTGC CGTTCCACAT CGACGCGCTG CTGACCGACT CGCCGCTGGT CGGTGGCCTG GCGCCCATGC TGGGCGACCA GCACCTGCGC GTGGTGTCAG TGCGGGGCTT CCCAACCTCG ACCTGGCCGG GGATTCTGGA CGACCTCAAC CGCCTCGGTT TTGCGTACCG CTGGAGCACG CGCTTTCTCT GCCTCGACAA AGCCGAGGCG GAGAAAGAGC TTTCCCGCCT GCGCCGCCAG TGGTTCGCCA AGCGCAAGAA CGTCATCGCG CTGCTGCGCG AAACGATCTT CCAGCAGGAA AGCCCGCTGG TCGATACCGA CGCCAACAAC AAGGCCGCCG ATGCCGACGC CGCCTTGCAG GAGCTGGGCA GCGATCAAGT CGCCTTCGGC TACCTGACGG CGACCGTGAC CGTCATGGAC ACGGACGCCG CCGTGGCGGA CGAGAAGCTG CGCATGGTGG AGCGTGTCAT CCAGGGTCGG GGTTTCGTCA CCATCCCCGA AACGCTCAAC GCCGTGGATG CCTGGTTGTC CTCGATCCCC GGCAATGCCT ACGCCAACGT GCGCCAGCCC ATCGTCTCGA CGTTGAACCT GGCGCACCTG ATGCCGGTGT CGGCGGTATG GGCTGGCCCC GAGCGCAATG ACCACCTCGA CGGCCCGCCG CTGATCGTCA CGCGCACCGA TGGCGCCACG CCGTTCCGGC TGGTGACGCA CATCGGCGAC GTGGGCCACA CGCTGGTGGC CGGGCCGACC GGCATGGGCA AATCGGTGCT GCTCGCCACC TTGGCAATGC AGTTCCGGCG CTACCCCGGC TCGCGCATCT TCGCCTTCGA CATGGGGCGC TCGATGCGGG CCACCATCCT GGGCCTCGGT GGCGAGCACT ACGACCTGGG CACGGATGGC GAAATCGCCT TCCAGCCGCT CGCGCGCATC GACCGCGAGG GCTACCGCAC CTGGGCGGCC GAATGGATCG AGGGCCGCTT GCTGCACGAA GGCGTGGCTG TCGGCCCAGA GGAGAAGGCG GCCATCTGGT CGGCGCTGGG AAGTCTCGCC GGTGCGCCGG TGGAGCAGCG CACGATGACG GGCCTGTCGG TGCTGTTGCA ATCGAATGCG CTGCGCCAGG CGCTGTCGCC CTATGTGCTC GGTGGCGCCC ACGGCAAGCT GCTGGACGCC GACCACGACC GGCTCGGTAT GGCCGACGTG CAGTGCTTCG AGATGGAGGA GCTGATGCAC AGCAAGGCCG CCGTCATGGC CGTGCTGCAT TACCTCTTTG CACGCTTCGA TGAACGCTTC GACGGGGCGC CCACGCTGCT GATCCTCGAT GAAGCGTGGT TGTTTCTCGA TGACCCGGTG TTTGCCGCGC GTATCCGGCA ATGGCTCAAG ACGCTGCGCA AGAAGAACGT GAGCGTCATC TTCGCCACGC AGAGCTTGGC CGACATCAAG GATTCGAGCA TCGCCCCGGC CATCATCGAG AGCTGCGCGA GCCGCATCTT CCTGCCGAAC CCGCAGGCGA CCGAACCGCA GATTCACACG ATCTACGAGG GCTTCGGGCT CAACAGGCGG CAGATCGAAA TCGTCGCCAC TGCGCAGCCC AAACGCGACT ACTACTACCA ATCACGCCTC GGCAACCGCC TATTCGACCT CGACCTGGGG CCGGCGGCGC TGGCCTTCGC GGGCGCGTCC ACGCCGCAAG ACCAGCGCGA CATGGATCGC GTGCTGCTGG ACGCCGGCGT GCCCGGCTTC GCGGACGCCT GGCTGCGCCA TCGCGGCCTC GATTGGGCGG CTGACCTGCT GCCTTCGTTC ACCGACCACC CACAGGAGAA CCTGCCATGA
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Protein sequence | MLNLAEYRQR PALLADWLPW AGLVAPGIVL NKDGSFQRTA RFRGPDLDSA TQGELIATSA RLNNALRRLG SGWALFIEAE RRAAADYPRS EFPEPLSWVV EEERRAAFED SGNHFESGYH LTLLYLPPEE SRARAAKMLY ENTPTNGVDW RERLQAFVAE TDRVFDLLDG VMPEVDWLDD AQTLTYLHAT ISTRRYSLAV PEVPFHIDAL LTDSPLVGGL APMLGDQHLR VVSVRGFPTS TWPGILDDLN RLGFAYRWST RFLCLDKAEA EKELSRLRRQ WFAKRKNVIA LLRETIFQQE SPLVDTDANN KAADADAALQ ELGSDQVAFG YLTATVTVMD TDAAVADEKL RMVERVIQGR GFVTIPETLN AVDAWLSSIP GNAYANVRQP IVSTLNLAHL MPVSAVWAGP ERNDHLDGPP LIVTRTDGAT PFRLVTHIGD VGHTLVAGPT GMGKSVLLAT LAMQFRRYPG SRIFAFDMGR SMRATILGLG GEHYDLGTDG EIAFQPLARI DREGYRTWAA EWIEGRLLHE GVAVGPEEKA AIWSALGSLA GAPVEQRTMT GLSVLLQSNA LRQALSPYVL GGAHGKLLDA DHDRLGMADV QCFEMEELMH SKAAVMAVLH YLFARFDERF DGAPTLLILD EAWLFLDDPV FAARIRQWLK TLRKKNVSVI FATQSLADIK DSSIAPAIIE SCASRIFLPN PQATEPQIHT IYEGFGLNRR QIEIVATAQP KRDYYYQSRL GNRLFDLDLG PAALAFAGAS TPQDQRDMDR VLLDAGVPGF ADAWLRHRGL DWAADLLPSF TDHPQENLP
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