| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rmet_1513 |
|---|
| Symbol | |
|---|
| ID | 4038316 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Cupriavidus metallidurans CH34 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007973 |
|---|
| Strand | + |
|---|
| Start bp | 1634055 |
|---|
| End bp | 1636109 |
|---|
| Gene Length | 2055 bp |
|---|
| Protein Length | 684 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 637976897 |
|---|
| Product | transketolase |
|---|
| Protein accession | YP_583665 |
|---|
| Protein GI | 94310455 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG0021] Transketolase |
|---|
| TIGRFAM ID | [TIGR00232] transketolase, bacterial and yeast |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.00869632 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 3 |
|---|
| Fosmid unclonability p-value | 0.000119249 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | decreased coverage |
|---|
| |
Sequence |
| Gene sequence | ATGGCCAGTA CCTCTGCCGA CCGCGTGCTG CGCCCCGAGA GCGGCCGCTA CGACGAACTC
GCCAACGCGC TGCGCGCCCT GGCCATGGAC GCCGTTCAGC AGGCCAACTC CGGCCACCCC
GGCGCGCCGA TGGGCATGGC CGAGATGGCC GTCGCGCTGT GGAGCGGTCA TCTGCGCCAC
AACCCGGGCA ATCCCGGGTG GCCCGACCGC GACCGGTTCG TCTTGTCCAA CGGGCATGCG
TCGATGCTGC TGTATGCCTT GCTGCACCTG AGCGGCTACG ACCTGCCGAT CGAGGAACTG
CAGCGCTTCC GGCAACTGCA CAGCAAGACC CCGGGCCACC CCGAGGTGGG CCTCACGCCC
GGCGTGGAAA CCACGACCGG CCCATTGGGC CAAGGTTTGG CGAACGCGGT CGGCATGGCG
CTGGCCGGGA AGTTGCTGGG CGACGAGTTC AACCGCCCGG GACATGTCGT GGTCGACCAC
CACACCTACG TCTTTCTCGG CGACGGCTGC CTGATGGAAG GCATCAGTCA CGAGGTCTGC
TCGCTGGCTG GCGTGTGGAG GCTCAACAAG CTGATCGCGC TGTACGACGA CAACGGCATC
TCGATCGACG GTGCGGTCGA TGCCTGGTTT CGCGACGACA CCGCGGCACG CTTTCGAGCC
TATGGCTGGA ACGTGATCGG CCCGATCGAC GGCCACGACG TCGTGGCGAT CGGGCGTTCC
ATCGCCGACG CGCGGCGCTC TGCCGACCGG CCCACGTTGA TCGTGTGCCG CACCACCATC
GGCCGCGGCT CCCCGGGACG CGCCGGTACG GCCAAGGCCC ATGGCGAACC GCTCGGGGCC
GACGAGATTG CCGCCACGCG CGCCGCCATC GGGTGGCACG AGGCTCCGTT CGAAATTCCG
GATACCGTGC GTGCGCGCTG GAGCGCGCGC GATCTGGGCG CCAGGCGCGA AGCTCAGTGG
CGCTTGGGCT TCGAGGCCTA CCGGAGCGAA TATCCCGCAC TGGCCGCGGA GTTCGAGCGC
CGGATTGCCG GCGACCTGCC GTCGTCGTTT CATGAAGCCG CGTCGGCAGC GATGATCGAA
CTCGGTCAGG CCACCACGCC GGTCGCCTCA CGCAAGGCTT CGCAGCAAGC GCTGGCGATG
CTGGCGCCCA AGATCCCCGA GATGCTCGGC GGCAGTGCCG ACCTCACGGG CTCTAACCTG
ACCGACTTCC CGGGCTGCGG TGCCGTGCGG GCCGGCCAGC CCGGCGGGCG CCACGTCAAC
TACGGCGTGC GCGAGTTCGG CATGGCGGCG ATCATGAACG GGCTGGCGCT GCACGGCGGC
TTCATTCCGT ACGGCGGCAC CTTCCTCACC TTCAGCGACT ACAGCCGCAA CGGAATTCGC
ATGGCCGCGC TGATGAAGCT GCGCGTGGTT CATGTCTTCA CGCACGACTC GATCGGCCTG
GGCGAGGACG GCCCGACGCA CCAGGCCGTC GAGCATGCCG CGAGCTTGCG CCTGATCCCC
AATCTCGATG TCTGGCGGCC CTGCGACGCC GCCGAGACCG CGGTGGCCTG GGCGTTCGCG
CTCGAGCAAC GCACGCGCCC CAGCGCGTTG CTGCTGTCGC GGCAGAACCT GCCGCCGCAG
GCGCGCACTG CGGAGCAGGT CGCGCAGATC CGTCGCGGCG GTTACGTGCT CTCCGACCGA
CCCGAGCCGC AGGTGGTGCT GATCGGCACC GGCTCCGAGG TGTCCATCGC GATGGAGGCG
CAGCGCCTTC TCGATGCGGT GGGCATCGCG GCGCGGGTGG TCTCGTTGCC CTGCAGCACC
CTCTTCGATC GGCAGGAGGC CGCCTGGCAC GAGCAGGTGC TCGGCCGGGG AATCCCGCGC
ATCGGCGTCG AAGCGGGCGT CACCTCGTGG TGGGGCCAGT ACCACTGCGT CGCCGCGCTG
GGGGTGAACA GCTTCGGCGA GTCGGCGCCC GGCCCGCAGG TGTACGAGCA CTTCGGCCTC
GACGCCAAGG CGCTGGCCGA CCTGGCACGC GAAGTGCTGG CGCGCGAAGT GCGGTTCGTC
CGGTCCAGGA GCTGA
|
|---|
| Protein sequence | MASTSADRVL RPESGRYDEL ANALRALAMD AVQQANSGHP GAPMGMAEMA VALWSGHLRH
NPGNPGWPDR DRFVLSNGHA SMLLYALLHL SGYDLPIEEL QRFRQLHSKT PGHPEVGLTP
GVETTTGPLG QGLANAVGMA LAGKLLGDEF NRPGHVVVDH HTYVFLGDGC LMEGISHEVC
SLAGVWRLNK LIALYDDNGI SIDGAVDAWF RDDTAARFRA YGWNVIGPID GHDVVAIGRS
IADARRSADR PTLIVCRTTI GRGSPGRAGT AKAHGEPLGA DEIAATRAAI GWHEAPFEIP
DTVRARWSAR DLGARREAQW RLGFEAYRSE YPALAAEFER RIAGDLPSSF HEAASAAMIE
LGQATTPVAS RKASQQALAM LAPKIPEMLG GSADLTGSNL TDFPGCGAVR AGQPGGRHVN
YGVREFGMAA IMNGLALHGG FIPYGGTFLT FSDYSRNGIR MAALMKLRVV HVFTHDSIGL
GEDGPTHQAV EHAASLRLIP NLDVWRPCDA AETAVAWAFA LEQRTRPSAL LLSRQNLPPQ
ARTAEQVAQI RRGGYVLSDR PEPQVVLIGT GSEVSIAMEA QRLLDAVGIA ARVVSLPCST
LFDRQEAAWH EQVLGRGIPR IGVEAGVTSW WGQYHCVAAL GVNSFGESAP GPQVYEHFGL
DAKALADLAR EVLAREVRFV RSRS
|
|---|
| |