Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rmet_1423 |
Symbol | dapD |
ID | 4038226 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Cupriavidus metallidurans CH34 |
Kingdom | Bacteria |
Replicon accession | NC_007973 |
Strand | - |
Start bp | 1536967 |
End bp | 1537791 |
Gene Length | 825 bp |
Protein Length | 274 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 637976807 |
Product | 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase |
Protein accession | YP_583575 |
Protein GI | 94310365 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG2171] Tetrahydrodipicolinate N-succinyltransferase |
TIGRFAM ID | [TIGR00965] 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase |
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Plasmid Coverage information |
Num covering plasmid clones | 9 |
Plasmid unclonability p-value | 0.000216153 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | 8 |
Fosmid unclonability p-value | 0.0246651 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACGCAAG CACTGCAAGC CCTGATCGAC CAGGCCTGGG AAGACCGCAC CAGCCTGTCG CCGAAGTCCG CGCCGAACGA CATCCGCGAA GCGGTGGCCA ACGTGATCTC GCAACTCGAT TCGGGCGCAC TGCGCGTGGC CGAGAAGCAA GGCAAGGACT GGGTCGTCAA CCAGTGGATC AAGAAGGCTG TGCTGCTGTC GTTCCGTCTG GAAGACAACG CGCCGATGAG CGCTGGCGGC TTTGCCCAGT TCTACGACAA GGTGCCGACC AAGTTCGCCA ACTGGACTGG CGACGACTTC GCGAAGGCCG GCTTCCGCGT GGTGCCGCCC GCCGTGGCCC GCCGTGGTTC GTACATCGCC AGGAACGCCG TGCTGATGCC GTCGTACGTC AACATTGGCG CCTACGTGGA TGAAGGCACG ATGGTCGACA CGTGGGCTAC CGTCGGCTCG TGCGCGCAGA TCGGCAAGAA CGTGCACCTG TCGGGCGGCG TCGGCATCGG CGGCGTGCTC GAGCCGCTGC AGGCCAACCC GGTCATCATC GAGGACAACT GCTTCATCGG CGCCCGTTCG GAAGTCGTGG AAGGCGTGAT CATCGAGGAA AACTCGGTGA TCTCGATGGG CGTGTACCTG GGCCAGTCGA CCAAGATCTA CGACCGTGAA ACGGGCGAAA TCCACTACGG CCGCGTGCCT GCCGGTTCGG TCGTCGTGGC CGGCAACCTG CCGTCGAAGG ATGGCAAGTA CAGCCTGTAC TGCGCCGTGA TCGTCAAGAA GGTGGACGCG CAAACCCGCG CCAAGACCAG CCTGAACGAC CTGCTGCGCG ACTGA
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Protein sequence | MTQALQALID QAWEDRTSLS PKSAPNDIRE AVANVISQLD SGALRVAEKQ GKDWVVNQWI KKAVLLSFRL EDNAPMSAGG FAQFYDKVPT KFANWTGDDF AKAGFRVVPP AVARRGSYIA RNAVLMPSYV NIGAYVDEGT MVDTWATVGS CAQIGKNVHL SGGVGIGGVL EPLQANPVII EDNCFIGARS EVVEGVIIEE NSVISMGVYL GQSTKIYDRE TGEIHYGRVP AGSVVVAGNL PSKDGKYSLY CAVIVKKVDA QTRAKTSLND LLRD
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