| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rmet_1389 |
|---|
| Symbol | |
|---|
| ID | 4038192 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Cupriavidus metallidurans CH34 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007973 |
|---|
| Strand | + |
|---|
| Start bp | 1498574 |
|---|
| End bp | 1499287 |
|---|
| Gene Length | 714 bp |
|---|
| Protein Length | 237 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 637976773 |
|---|
| Product | haloacid dehalogenase, type II |
|---|
| Protein accession | YP_583541 |
|---|
| Protein GI | 94310331 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG1011] Predicted hydrolase (HAD superfamily) |
|---|
| TIGRFAM ID | [TIGR01428] 2-haloalkanoic acid dehalogenase, type II
[TIGR01493] Haloacid dehalogenase superfamily, subfamily IA, variant 2 with 3rd motif like haloacid dehalogenase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 0.0325211 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 15 |
|---|
| Fosmid unclonability p-value | 0.752698 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCAAGA TTCGCGCGGT AGTTTTCGAT GCTTACGGCA CGCTGTTCGA CGTGTATTCG
GTCACGGCGC GCGCGGAGCA ACTGTTCCCC GGCAAGGGCG AGACGCTGGC CCTGCTGTGG
CGCGAGCGGC AGATCGACTA CTCGCGGCTG CGTTCGCTCG CCGCGCCAGA CGGATCGCGC
TACAAGCCGT TCTGGGACAT CACGATCGAT GCGCTGCGCT ACGCGGCCGA ACGGCTCGGA
CTGCCGCTCG ACGAAGCGGC GGAAGCGCAA CTGCTGAAGG AATACGCGTG CCTGTCGGCG
TTTCCGGAGA ACCTTGGCGC GCTCAAGCGG CTGCGCCGGG CGAATTTGCC GCTCGGCATC
CTGTCCAATG GCAATCCGGA GATGCTCGAC ATCGCAGTGA AGAGCGCGGG GATGCACGGG
CTGTTCGACC ACGTGCTGTC GGTCGATCCG GTGCGCCAGT ACAAGACTTC GCCGGCCGCG
TACGCGCTGG GGCCGCAAGC GTTCAACCTG TCTGCTGGCG AGATCCTTTT TGTCTCGTCC
AACTGCTGGG ATGCCTGTGG CGCCACCTGG TTTGGCTACA CCACTTTCTG GATCAATCGT
GCCGGTCATC CGGCGGAGCG CCTCGACGTG GCGCCCACCG GTACCGGGCA TGACATGAAC
GACCTGCTTG CTTTCGCTTC GCCACTGGTT ACCGCCACTG GCGTTGCGCT CTGA
|
|---|
| Protein sequence | MSKIRAVVFD AYGTLFDVYS VTARAEQLFP GKGETLALLW RERQIDYSRL RSLAAPDGSR
YKPFWDITID ALRYAAERLG LPLDEAAEAQ LLKEYACLSA FPENLGALKR LRRANLPLGI
LSNGNPEMLD IAVKSAGMHG LFDHVLSVDP VRQYKTSPAA YALGPQAFNL SAGEILFVSS
NCWDACGATW FGYTTFWINR AGHPAERLDV APTGTGHDMN DLLAFASPLV TATGVAL
|
|---|
| |