| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rmet_1356 |
|---|
| Symbol | |
|---|
| ID | 4038159 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Cupriavidus metallidurans CH34 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007973 |
|---|
| Strand | + |
|---|
| Start bp | 1464177 |
|---|
| End bp | 1466267 |
|---|
| Gene Length | 2091 bp |
|---|
| Protein Length | 696 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 637976740 |
|---|
| Product | Poly(R)-hydroxyalkanoic acid synthase, class I |
|---|
| Protein accession | YP_583508 |
|---|
| Protein GI | 94310298 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG3243] Poly(3-hydroxyalkanoate) synthetase |
|---|
| TIGRFAM ID | [TIGR01838] poly(R)-hydroxyalkanoic acid synthase, class I |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 15 |
|---|
| Fosmid unclonability p-value | 0.817787 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCTTTAA ATGTATCGAA ACCGAGGAAT TACTCTAGGG TTTCGCCGGC TAGCATAGCG
TATGACGCAG GGCATCCGAG GTCGTTCTGC AGCAGTGTCA GACGCAACCC GGATCAGGGG
CGGGTCGGGA GACAGTCACC CCGAGCCCGT CAACCAATAC GACGGCAGAG AGACGAATAC
ATTATGGCGA CCGGCAAAGG TGCGGCAGCT TCCGCTAAGG AAGGCAAGTC CCAACCGTTT
CAGTTCGTGC CGGGGCCATT TGATCCAGCC ACCTGGCTGG AGTGGTCCCG TCAATGGGTA
CCCGAGGCCA ACGGCGATAT GCCGTCAGGT TTCCCGGCCG GTATGGCCGG CGCGTTTCCG
GGTGGATTCC CGGGCGGCGA GGCATTCGTC CAGGCCTTCC AGAACGCTTT CCAGGGTGCC
ACCGCGCAGG GTGCGAACGG CATGAATGGC GCCGGCGGCG TGAAGATCGC GCCCGCGCAG
CTTGCTCGTA TCCAGGAACG CTTTTTCAGG GATTTCGCCG AACTCTGGCG AGAAATGGGC
GAGGGCGCCG TGGCAGCCAG CACGCCTGCG CCCAACGGCG CGGCCAATGC CGATTCAGCC
AGCCAGCGCT TGTCCGACAA GCGTTTCGCC AGCCCGGCAT GGCGCAACAA TGCCCCGTAT
CGCTATACCG CAGCCTTTTA CCTGCTGACG GCCCGGGCCA TGACCGAACT GGCCGAGGCG
GTCGAGGCCG ATCCCAAGGT TCGTCAGCGC ATCCGCTTCG CGGTATCGCA ATGGGTGGAT
GCCATGTCGC CGGCCAACTT CCTGGCGACG AACCCCGACG CGCAACAGCG CCTGATCGAA
TCCGGTGGTG AGTCGCTGCG CAAGGGCGTG CGCAATATGC TGGAGGATCT GGGCAGGGGC
AAGATCTCAC AGACTGACGA AACAGCGTTC GAGGTCGGCC GCAATATGGC CGTGACCGAA
GGCGCCGTAG TCTACGAGAA CGAGTATTTC CAGCTTCTGC AGTACAAGCC TCTGACCGAC
AAGGTCTACG AGCGGCCGCT GCTGATGGTG CCGCCGTGCA TCAACAAGTT CTACATTCTG
GACCTGCAAC CCGAGAGCTC GCTGGTGCGT CATGCGGTGG AGCAGGGGAA TACCGTCTTC
CTGGTGTCGT GGCGCAACCC CGATGCATCG ATGGCCGAGC GCACCTGGGA TGAGTACATC
GAGCACGCGG CGATCCGCGC GATCGAAGTG ACGCGCGACA TCAGCGGACA GGACAAGATC
AACGTGCTGG GCTTCTGCGT CGGCGGCACG ATCGTCTCGA CGGCGCTTTC GGTGCTGGCC
GCGCGTGGCG AGCGTCCCGC AGCCAGCCTG ACATTGCTGA CCACGCTGCT GGATTTCGCC
GATACGGGCA TCCTCGATGT CTTCGTCGAC GAAGCGCACG TGCAACTGCG CGAGGCCACG
CTGGGTGGGG CCGGCGGCGC GCCGTGCGGG CTGCTGCGCG GCGTGGAACT TGCCAATACG
TTCTCGTTCC TTCGTCCGAA CGACCTGGTC TGGAACTACG TGGTCGACAA CTATCTCAAG
GGCAACACGC CGGTTCCGTT CGACCTGTTG TTCTGGAATG GCGACGCCAC CAATCTCCCG
GGCCCGTGGT ACTGCTGGTA CCTGAGGCAT ACGTATCTGC AGGACGAGTT GAAGGTGCCG
GGCAAGCTCA CGGTCTGCAA CGCGCCGGTG GACTTCGGGG CGATCGACGT GCCAACGTAC
ATCTACGGGT CGCGCGAAGA CCACATCGTG CCCTGGGCCG CGGCCTACGC TTCCACGGCG
CTGCTGCGGA ACAAGTTGCG TTTCGTGCTG GGTGCCTCTG GCCATATCGC GGGCGTCATC
AACCCGCCGG CCAAGAAGAA GCGCAGTCAT TGGACCAATG ACAAATTGTC GGAATCGGCC
CATGATTGGC TGGCCGGCGC GCAGGAGCAT CCGGGAAGCT GGTGGCCGGA CTGGGTGACA
TGGCTGGGCA AGCAGGCGGG TCAGAAGCGT GCCGCGCCAG CCGATTACGG CAATGACCAC
TACCGGGCGA TTGAACCCGC GCCAGGGCGC TACGTCAAAC AGCGCGCCTG A
|
|---|
| Protein sequence | MPLNVSKPRN YSRVSPASIA YDAGHPRSFC SSVRRNPDQG RVGRQSPRAR QPIRRQRDEY
IMATGKGAAA SAKEGKSQPF QFVPGPFDPA TWLEWSRQWV PEANGDMPSG FPAGMAGAFP
GGFPGGEAFV QAFQNAFQGA TAQGANGMNG AGGVKIAPAQ LARIQERFFR DFAELWREMG
EGAVAASTPA PNGAANADSA SQRLSDKRFA SPAWRNNAPY RYTAAFYLLT ARAMTELAEA
VEADPKVRQR IRFAVSQWVD AMSPANFLAT NPDAQQRLIE SGGESLRKGV RNMLEDLGRG
KISQTDETAF EVGRNMAVTE GAVVYENEYF QLLQYKPLTD KVYERPLLMV PPCINKFYIL
DLQPESSLVR HAVEQGNTVF LVSWRNPDAS MAERTWDEYI EHAAIRAIEV TRDISGQDKI
NVLGFCVGGT IVSTALSVLA ARGERPAASL TLLTTLLDFA DTGILDVFVD EAHVQLREAT
LGGAGGAPCG LLRGVELANT FSFLRPNDLV WNYVVDNYLK GNTPVPFDLL FWNGDATNLP
GPWYCWYLRH TYLQDELKVP GKLTVCNAPV DFGAIDVPTY IYGSREDHIV PWAAAYASTA
LLRNKLRFVL GASGHIAGVI NPPAKKKRSH WTNDKLSESA HDWLAGAQEH PGSWWPDWVT
WLGKQAGQKR AAPADYGNDH YRAIEPAPGR YVKQRA
|
|---|
| |