| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rmet_1091 |
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| Symbol | |
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| ID | 4037889 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Cupriavidus metallidurans CH34 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007973 |
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| Strand | - |
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| Start bp | 1185361 |
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| End bp | 1187322 |
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| Gene Length | 1962 bp |
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| Protein Length | 653 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 637976473 |
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| Product | diguanylate cyclase |
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| Protein accession | YP_583246 |
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| Protein GI | 94310036 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2199] FOG: GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 29 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 6 |
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| Fosmid unclonability p-value | 0.00555182 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGCTGACTT CGCGCGACAA ATCGCCTTTG GCATGGGGGA AGATCCGCCA CGTCCAGGTG
AGTGAGCAAG TCATTTCTGA CCAATCAGTA GACGTTTCAT CAGCGGGAAT CATGGGCCAT
TCACAGAGTT CAGCTACTTA CTGGTCGATG GATCGGCGCA TGAAGAAGTC GTGGCTTCGG
CGGGCGTTAC CTATTCTGGC CCTGCTGGTG GCCATAGATA TCCTGGTGAA TGTATGGCAG
TCCTACTATG ACTTTCGTGC AATCAACGCC CTGGCCGCCC GGCTACTGGA TGTGCAATCT
TCCCTGATGG CCGGACGTAT TGCAGATCAG TTTCGCGACG TAACTGCGTT AACGAGCGGA
ACGGAGCGTC TGCTCGATAC GGGCACACTC ACGGACGCCA CACTTGTCAA TCTCACCGAG
GCTCTGGATA ACCCATTGAG ACGCGCGCTA ATCGGGGTGT TCGATCCGCA GGGTGAGCAT
CTGCTTGCCA GTTCCCGTCC AAGCTTCATG AACGAAGTGC CGCCGCTTGA CCAGATTTTG
GCAAGAGTGC GAGCCAATCC GTCAAACGCC GTCATACTCC CCGTCGCGTG GGGCGAGCGT
GGCGCGGTCG TGGTCGCCAA AGGGCATCAG AACCGGGCGA TCGACCTTGA TGCGGTGGTC
GTCATCATCC TGACCTACGA ACGCCTTGTG CTTGACGGCG TGAACCTGGC ACCCGGCACC
TCCGTTCTGC TATTGGATAG CGAACACCGC CTGGTGATGC GTGATCCGGA GCATCCGACA
CTAGCCGTTG GACAGGTCCT GCGTGAAGAT CGCGGGCGGG CCGGACCAAC AACCGCAACG
CAATATGCTT CCTCGCAAAT CGACGGTATC GAGCGTTTGG TGTCCACACG AAGCATTGCG
ACACGGCTGA CCCCCGACCA CTGGACGGTG GCGGTCGGAT ATTCGGTCAG CGATTTCCGG
GAGGGCTTCT GGCGGAGCAC CTACATCAAT GCGGCCGGCG CCGCTGTCAT GCTTCTCATG
TTGGTGAGTG GCATTCTGCT GATCCTCCAC GAGCGTCGTC TGCAGGATCG GGTCGAGAGA
TTCGCGAGCA TGGTGTCAAC CGTCGTCAAG AACATGCCGA CGCCCGTTGC CGTAGTCGAC
CATGACACGG AACAGATCCT CCTGACTAAC GAAGCCCTAC TCGCTGACTT CGGCGCTGTG
GCCGGAGCGG GGCAATCATT CTCCCGGCTC TTTGCGAACG CCGCAGACTG GTCGCAGGTA
TGTACGACCC GTATGGATGA AGCCATTCCC ATGCTCACGC GCGACGGAAC GCGATACATG
CTGGTGCATT GTGCTCAGCT TGAGTTTGGA GGTGAATCAG TCGCGTCAAA AGCGGTGCTT
GTCACACTGG TCGACGTCAA CAGCCAGCAA CAGATGCTCA AGGAGTTGCG AACCCAAGCC
GACCTCGATG CACTGACCGG GCTCGCCAAC CGCCGCTATT TCGAAAACGC AGCCCAGAAG
GCAGTCATGC ACGCGCGCAA GCAAGGCAGT GCCTTGTCGA TACTCGCGCT CGATCTTGAT
CTATTCAAGC GGGTGAATGA TACCTACGGC CATGCCGCTG GCGATCGCGT TTTACAGGTG
GTGGCGCGGC AATTCGAGGG CGCATTGCGC AGCACTGACC TTGGCGCGCG AATTGGCGGA
GAAGAGTTCA CCGCAATCCT GTTCGATACA GCGCTGGGAC AGGCGCAGGT GATCGCCGAG
CGCATCCGCG CTGCCATCCA GAACACGCCG ATCATTCTTG AGTCCGGAGA AGCAATCACG
CAGACCGTGA GTATTGGCAT CGCGGCGTAC CGCGAGGACG AATCCGACCT CGCGGCAGCG
CAGGAACGGG CGGACGCCGC CCTCTACAGT GCCAAGGCAG CGGGGCGAAA CCGCGTTCAT
GTGTATGTGC CCGAGACGTC TGCGCCCCAG GATGCCGGCT AG
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| Protein sequence | MLTSRDKSPL AWGKIRHVQV SEQVISDQSV DVSSAGIMGH SQSSATYWSM DRRMKKSWLR
RALPILALLV AIDILVNVWQ SYYDFRAINA LAARLLDVQS SLMAGRIADQ FRDVTALTSG
TERLLDTGTL TDATLVNLTE ALDNPLRRAL IGVFDPQGEH LLASSRPSFM NEVPPLDQIL
ARVRANPSNA VILPVAWGER GAVVVAKGHQ NRAIDLDAVV VIILTYERLV LDGVNLAPGT
SVLLLDSEHR LVMRDPEHPT LAVGQVLRED RGRAGPTTAT QYASSQIDGI ERLVSTRSIA
TRLTPDHWTV AVGYSVSDFR EGFWRSTYIN AAGAAVMLLM LVSGILLILH ERRLQDRVER
FASMVSTVVK NMPTPVAVVD HDTEQILLTN EALLADFGAV AGAGQSFSRL FANAADWSQV
CTTRMDEAIP MLTRDGTRYM LVHCAQLEFG GESVASKAVL VTLVDVNSQQ QMLKELRTQA
DLDALTGLAN RRYFENAAQK AVMHARKQGS ALSILALDLD LFKRVNDTYG HAAGDRVLQV
VARQFEGALR STDLGARIGG EEFTAILFDT ALGQAQVIAE RIRAAIQNTP IILESGEAIT
QTVSIGIAAY REDESDLAAA QERADAALYS AKAAGRNRVH VYVPETSAPQ DAG
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