Gene Rmet_1016 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRmet_1016 
Symbol 
ID4037813 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameCupriavidus metallidurans CH34 
KingdomBacteria 
Replicon accessionNC_007973 
Strand
Start bp1105662 
End bp1106294 
Gene Length633 bp 
Protein Length210 aa 
Translation table11 
GC content62% 
IMG OID637976397 
ProductTetR family transcriptional regulator 
Protein accessionYP_583171 
Protein GI94309961 
COG category[K] Transcription 
COG ID[COG1309] Transcriptional regulator 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value0.00988275 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clones14 
Fosmid unclonability p-value0.688061 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTCAAACG AGCCAAGAAC CAAGCGGGAC CCCGAGGGCA CGCGCCGGCG CATTCTGGCT 
GCGGCCACGG AAGAGTTTGC CAAGGGCGGG CTGGCCGGCG CGCGCGTCGA CCAGATCGCA
CGCCGTGCCG AGACCAACGA GCGGATGCTG TATTACTACT ACGGCAGCAA GGAGGGCTTG
TTCCTGGCGG TGCTCGAAAA GCAGTATGCG GAATTTCGCG CGGACGAGGA GCGTCTCCAC
ATCACCGACG AAGACCCGGT TGCCGCCGTC CGCACGCTGG CCCGCTTCGT CTGGGACTGG
TATTACAAGC ATCCGGAGTT TATCCGGCTG GTGAACAGCG AGAACCTGCA CGAGGCGCGG
CACCTGAAGA AGTCCGCGCA ATTGCATCAG CTCGTCAACC CGGTGGTCGA CGTGCTGGCC
GACATCATCA AGCGAGGACA GAAGCGGGGC CTGTTCCGCG ATGACATCGA CGTGCCGCAG
TTCTATCTGA CCATCTCGGC GCTCGGCTAT TACGTGCTGT CGAATCGTTA CACGATCAGT
GCCGTGATCG GCCGGGACGT GGCCTCGGAG GAGGAGCACG ATCGCTTTGC CGATCTGCAT
ACCGAGATGC TGCTGTCGTA CCTGAAGCGC TGA
 
Protein sequence
MSNEPRTKRD PEGTRRRILA AATEEFAKGG LAGARVDQIA RRAETNERML YYYYGSKEGL 
FLAVLEKQYA EFRADEERLH ITDEDPVAAV RTLARFVWDW YYKHPEFIRL VNSENLHEAR
HLKKSAQLHQ LVNPVVDVLA DIIKRGQKRG LFRDDIDVPQ FYLTISALGY YVLSNRYTIS
AVIGRDVASE EEHDRFADLH TEMLLSYLKR