| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rmet_0788 |
|---|
| Symbol | upp |
|---|
| ID | 4037579 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Cupriavidus metallidurans CH34 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007973 |
|---|
| Strand | - |
|---|
| Start bp | 864347 |
|---|
| End bp | 864997 |
|---|
| Gene Length | 651 bp |
|---|
| Protein Length | 216 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 637976164 |
|---|
| Product | uracil phosphoribosyltransferase |
|---|
| Protein accession | YP_582943 |
|---|
| Protein GI | 94309733 |
|---|
| COG category | [F] Nucleotide transport and metabolism |
|---|
| COG ID | [COG0035] Uracil phosphoribosyltransferase |
|---|
| TIGRFAM ID | [TIGR01091] uracil phosphoribosyltransferase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 0.0190472 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 10 |
|---|
| Fosmid unclonability p-value | 0.0749115 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAACAAG ATCCGCGCTT TCCCAATCTC TTCATCCTCG ATCACCCGCT GATCCAGCAC
AAGCTCTCGC ACATGCGCGA CAAGGAAACG TCGACACGCA CGTTCCGCGA GTTGCTGCGC
GAGATCACGC TGCTGATGGG CTACGAGATC ACGCGCAACC TGCCGCTGAC CACGCGCCGC
ATCGACACGC CGCTGGTGCC GCTGGACGCC CCGGTCATCG CCGGCAAGAA GCTGACGATC
GTGCCCGTGC TGCGCGCCGG CGTCGGCATG AGCGACGGCC TGGTGGAACT GATTCCGTCG
GCGCGTATCG GCCATATCGG CGTATATCGC GACGATCAGC ACCGCCCGGT GGAGTATCTG
GTGCGCCTGC CGGACGTGGA AGATCGCTCG TTCATCTTGT GTGACCCGAT GGTCGCCACC
GGTTATTCGG CTGCCCATGC GGTGGATGTG CTCAAGCGCC GTGGTGTCAA GGACGAATCC
ATCACCTTCG TGGCGCTGGT GGCTGCGCCC GAGGGCGTCG AGGTGTTCCA GAAGGCCCAC
CCCGGCGTGA AGCTCTACGT CGCCTCGCTG GACAACCATC TGGACGACCA TGCCTATATC
GTGCCGGGCC TCGGCGACGC CGGCGACCGT CTCTTCGGCA CCAAGAACTA A
|
|---|
| Protein sequence | MKQDPRFPNL FILDHPLIQH KLSHMRDKET STRTFRELLR EITLLMGYEI TRNLPLTTRR
IDTPLVPLDA PVIAGKKLTI VPVLRAGVGM SDGLVELIPS ARIGHIGVYR DDQHRPVEYL
VRLPDVEDRS FILCDPMVAT GYSAAHAVDV LKRRGVKDES ITFVALVAAP EGVEVFQKAH
PGVKLYVASL DNHLDDHAYI VPGLGDAGDR LFGTKN
|
|---|
| |