| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rmet_0783 |
|---|
| Symbol | |
|---|
| ID | 4037574 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Cupriavidus metallidurans CH34 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007973 |
|---|
| Strand | - |
|---|
| Start bp | 859017 |
|---|
| End bp | 859928 |
|---|
| Gene Length | 912 bp |
|---|
| Protein Length | 303 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 637976159 |
|---|
| Product | coproporphyrinogen III oxidase |
|---|
| Protein accession | YP_582938 |
|---|
| Protein GI | 94309728 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG0408] Coproporphyrinogen III oxidase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.00696662 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 0.252663 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATCGATT CCCAGGCAGT CCGTGACTAT CTGCTCGGCC TGCAAGACCG CATCACCGAC
GCCATCGCCG CTGTCGACGG CCAGGCGTTC CTGACCGATA ACTGGGAGAA GCCCCCCACC
GAGCGCCTGC GCGGCAGTGG CCGCACGCGC ATCCTGGAGG GCGGCGCCGT GATGGAGCGG
GCTGGCGTGG GGTTCTCGCA CGTGCGCGGT GACACGCTGC CGCCGTCGGC CAGCGCCAAC
CGGCCTGAAC TGGCCGGCCG CAGCTTCGAG GCGATGGGCG TCTCGCTGGT ATTCCATCCG
CGCAACCCGT ACGTGCCCAC CGTGCACATG AACGTGCGCT GCTTCATCGC CGTGAAGCCC
GACGCGGAAC CGGTCTGGTG GTTCGGGGGT GGCATGGATC TGACGCCGTA CTACGGCAAC
GCCGACGACT GCGCGCACTT CCACCGCACC TGCAAGGATT CGCTGGCCCC GTTCGGCGAC
GACCTGTATC CGCGCTTCAA GCAGTGGTGC GACGAGTATT TTTTCCTCCG CCATCGTGGC
GAGGCACGCG GCATCGGCGG CATCTTCTTC GATGATTTCT CGGCGCTCGG CTTCGACCGC
AGCTTCGAGA TGCTGCGCTC GGTCGGCGAT GCGTTCCTCG CCGCCTACCT GCCGATCCTC
ACCGCACGCA AGGACGCCGC CTATGGCGAG CGCGAGCGCG ATTTCCAGGC CTATCGCCGC
GGCCGCTACG TCGAATTCAA TCTGGTGTTC GACCGTGGCA CGCTGTTCGG CCTGCAGTCG
GGCGGTCGCA CGGAGTCGAT CCTGATGTCG ATGCCACCGC AGGTATCGTG GCGCTACGAC
TGGCAGCCCG AGCCGGGCAC CCCGGAAGCC GCGCTCTATA CCGATTTCCT GCCGGCGCGG
GACTGGGCCT GA
|
|---|
| Protein sequence | MIDSQAVRDY LLGLQDRITD AIAAVDGQAF LTDNWEKPPT ERLRGSGRTR ILEGGAVMER
AGVGFSHVRG DTLPPSASAN RPELAGRSFE AMGVSLVFHP RNPYVPTVHM NVRCFIAVKP
DAEPVWWFGG GMDLTPYYGN ADDCAHFHRT CKDSLAPFGD DLYPRFKQWC DEYFFLRHRG
EARGIGGIFF DDFSALGFDR SFEMLRSVGD AFLAAYLPIL TARKDAAYGE RERDFQAYRR
GRYVEFNLVF DRGTLFGLQS GGRTESILMS MPPQVSWRYD WQPEPGTPEA ALYTDFLPAR
DWA
|
|---|
| |