| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rmet_0519 |
|---|
| Symbol | xerD |
|---|
| ID | 4037308 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Cupriavidus metallidurans CH34 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007973 |
|---|
| Strand | - |
|---|
| Start bp | 555094 |
|---|
| End bp | 556002 |
|---|
| Gene Length | 909 bp |
|---|
| Protein Length | 302 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 637975894 |
|---|
| Product | site-specific tyrosine recombinase XerD |
|---|
| Protein accession | YP_582674 |
|---|
| Protein GI | 94309464 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG4974] Site-specific recombinase XerD |
|---|
| TIGRFAM ID | [TIGR02225] tyrosine recombinase XerD |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 0.0998774 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 0.238721 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACGGCGG CACTCGATGG CGACCTGTCG CTGGTCGACC GGTTCTGCGA TGCGTTGTGG
CTCGAAGATG GCCTGGCACG CAATACGATC GACGCCTACC GGCGCGACCT GGCCATGCTG
GCGCGCTGGC TGCACGAGTC CGGCACCACG GCGTTACTGG GCGTCGACGA CACCGCGCTT
TCCGGATACT TCGCCGCGCG TCACCTGGAG ACGCGCGCTT CCTCGGCCAA TCGCCGCCTG
ACTGTGTTCC GCCGTTTCTA TCAGTGGGCC CTGCGCGAGC ACATGATCGA GGCCGACCCC
TGCCTGCTGC TGCGCCCCGC CAAGCAGCCA CCCCGGTTCC CGAAGACGCT GTCCGAGGCA
CAGGTGGTGG CGCTGCTGGA AGCCCCCGAT ATCGAAACGC CGCTGGGCCT GCGGGACCGC
ACCATGCTCG AACTGATGTA TGCGAGCGGG CTGCGCGTGT CCGAGCTCAC GAACATGAAG
ACCATCGAAG TCGGCCTGAA TGAAGGCGTG GCGCGCGTGG TTGGCGGCAA GGGCAACAAG
GAGCGGCTGG TGCCATTCGG CGCGCAGGCC GGCGACTGGC TGCATCGCTA CCTGTCCGAT
GCGCGCCCCA CGTTGCTGGC GGGCCGCGCG TGCGACGAAC TCTTCGTCAC GCAGCGCGGC
GAGGGCATGA CGCGCCAGAC GTTCTGGCAC CTGATCAAGA AACACGCGCG TGACGCGGGC
ATTCACGCCC CGCTCTCCCC GCATACGCTC CGGCACGCCT TTGCCACGCA CCTGCTTAAT
CACGGCGCCG ACCTGCGCGT GGTGCAGCTG CTGCTGGGGC ACGCCGATAT CTCCACCACG
CAGATCTACA CGCACGTCGC GCGCGAGCGC CTGCGCGAAC TGCACCTGCA TCACCATCCG
CGCGGCTGA
|
|---|
| Protein sequence | MTAALDGDLS LVDRFCDALW LEDGLARNTI DAYRRDLAML ARWLHESGTT ALLGVDDTAL
SGYFAARHLE TRASSANRRL TVFRRFYQWA LREHMIEADP CLLLRPAKQP PRFPKTLSEA
QVVALLEAPD IETPLGLRDR TMLELMYASG LRVSELTNMK TIEVGLNEGV ARVVGGKGNK
ERLVPFGAQA GDWLHRYLSD ARPTLLAGRA CDELFVTQRG EGMTRQTFWH LIKKHARDAG
IHAPLSPHTL RHAFATHLLN HGADLRVVQL LLGHADISTT QIYTHVARER LRELHLHHHP
RG
|
|---|
| |