Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rmet_0508 |
Symbol | |
ID | 4037297 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Cupriavidus metallidurans CH34 |
Kingdom | Bacteria |
Replicon accession | NC_007973 |
Strand | - |
Start bp | 538842 |
End bp | 540398 |
Gene Length | 1557 bp |
Protein Length | 518 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 637975883 |
Product | D-alanyl-D-alanine carboxypeptidase PBP3 |
Protein accession | YP_582663 |
Protein GI | 94309453 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG2027] D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 4) |
TIGRFAM ID | [TIGR00666] D-alanyl-D-alanine carboxypeptidase, serine-type, PBP4 family |
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Plasmid Coverage information |
Num covering plasmid clones | 16 |
Plasmid unclonability p-value | 0.125847 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 17 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAGCGCCA TGCCAATCCG CCCCTCCCTG CTCCGCCGCA GCCTGTCTCC CGTTATCGCA ACGGCCGCGC TGCTCGCCTT CGGCCTGACT GGAGCCCAGG CCAAACCCGT CAAATCCGTC AAAGCCACCA AACCGTCGGT CCAGCGCGTC AGTGCAGAAG CCGCGGACCC GGCCGCCGCG CGCACCGGCC TGCCCGCTAC TGTCACCACG GCGCTGCGCC GCGCGCATGT GCCGCTGTCG GCAGCAAGCT TCTACGTGAT CAAGGTCGGC GCGCCGCGCC CGCGTGTGAG CTGGAACGCC GAGGCGCCGA TGAACCCGGC GTCGACGATG AAGCTGGTCA CCACGTTCGC CGGCCTGCAA TTGCTCGGGC CCGACTATCG CTGGCTCACT TCGCTCTACG CCGATGGCCA GCCGGGTCCG GACGGGGTGA TCAACGGCAA CGTCTATCTG CGCGGCCGGG GAGACCCGAA GCTGGTGCCC GAGGAGATGG CCAAGCTGGT CAACACGGCG CGATCGACAG GCGCAACGGC CATCAACGGC GATCTCGTGC TCGACCGCAG CTTCTTCGCG GATACCCAGG ACAACAGCTA CACGATCGAT GGCGAGACGC AACGCGCCTA CAACGTCAAT CCTGATGCGC TGCTTTATGC CTTCAAGACG CTCACCTTCA CGATCACGCC CGACGCCGCC GGCCGCGCCG TCGACGTGGC CGTCACGCCG GCGCTGGCGC AATTGCGTGT GGATAACCGC CTGACGCTGG TCAACGGCCG TTGCGGTGAC TGGCGCGCAC GTGCCAACCC AAGCATCACG CCGCAGTCAG ACGGCACCAT CGTCGCCGCG TTCGACGGCA ACTACTCCGC CGATTGTGGC GAACACGTGG TCAACCTGGC CACGCTCTCG CACAGCGATT TCATCTGGGG CGGCTTCGTG GCCGAATGGC AGGCGGCGGG TGGCCGCTTC GTGCGTCCGC CCGGGCTGCG TGGCGGCACC GTGCCGCGCG GCGCGTTCCT GCTGGCGCGG CACTACGGCC AGCCGCTCGG CGAGATCGTG CGCGACATCA ACAAGTTCTC GAACAACGTG ATGGCACGTC AGCTCTTCCT GACGATTGGC GCGGAGATCG ACCGGAGCGG CCCAGCCAGC ACCGAGAAGT CGACGCGCGT GATCAAGCGC TGGCTATCGC GCCAGGGACT GGACATGCCG GATCTGGTAC TGGAAAACGG CTCGGGACTG TCACGCGAGG AACGGATCAG CGCTTATGAC ATGGCGCGTC TGCTGCAACA GGCACTGGCC AGCAATGTTG GGCCGGTGCT GATGGACTCC CTGCCGATCC TCGGCGTGGA TGGCACCCTG CGCAATCGCC TGACCCGGGC CAATGCGGCC GGCAATGCCT ACCTGAAGAC GGGCACACTG CAGGACGTAC GCGCGCTGGC GGGCTACGTC GACGCGCTCG ACGGGCAGCG TTATGTGGTG GTGGCGTATA TCAATCACCC GAACGCATCG GGAGCGCAGG AGGCGCACGA TGCGTTGATG CAGTGGGTGT ATAAGGGCAC GCCTTGA
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Protein sequence | MSAMPIRPSL LRRSLSPVIA TAALLAFGLT GAQAKPVKSV KATKPSVQRV SAEAADPAAA RTGLPATVTT ALRRAHVPLS AASFYVIKVG APRPRVSWNA EAPMNPASTM KLVTTFAGLQ LLGPDYRWLT SLYADGQPGP DGVINGNVYL RGRGDPKLVP EEMAKLVNTA RSTGATAING DLVLDRSFFA DTQDNSYTID GETQRAYNVN PDALLYAFKT LTFTITPDAA GRAVDVAVTP ALAQLRVDNR LTLVNGRCGD WRARANPSIT PQSDGTIVAA FDGNYSADCG EHVVNLATLS HSDFIWGGFV AEWQAAGGRF VRPPGLRGGT VPRGAFLLAR HYGQPLGEIV RDINKFSNNV MARQLFLTIG AEIDRSGPAS TEKSTRVIKR WLSRQGLDMP DLVLENGSGL SREERISAYD MARLLQQALA SNVGPVLMDS LPILGVDGTL RNRLTRANAA GNAYLKTGTL QDVRALAGYV DALDGQRYVV VAYINHPNAS GAQEAHDALM QWVYKGTP
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