Gene Rmet_0474 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRmet_0474 
Symbol 
ID4037263 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameCupriavidus metallidurans CH34 
KingdomBacteria 
Replicon accessionNC_007973 
Strand
Start bp503388 
End bp505175 
Gene Length1788 bp 
Protein Length595 aa 
Translation table11 
GC content64% 
IMG OID637975849 
ProductO-antigen polymerase 
Protein accessionYP_582629 
Protein GI94309419 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG3307] Lipid A core - O-antigen ligase and related enzymes 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones22 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones17 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCCGGCAC CTCGAGCTAC GCTTCCCGCG ACGGCGATCG TCGTCGCATT TACCTTGCCC 
CTGCTGGTTT CGAAGCACAC GCTGCCGCTT GCCACGTTCT ATGGCGAGTG GACGGCCGGA
TTGCTTGGCG TATTCCTGAT CATCGCCCTG GCGCTGAGGC CAAGCCAGTC GGGCTCGAGA
GCGTCCAGGT CGTTCCCGTG GATCATGCTG CTGCCGATCT GGTTGATTGT CACGACTGTC
GCGCAAGCCG TCACGGGTAT GGTCGATGTC ACCGGCAGCC GTCAACTCAC GCAAATCGTG
CTGGCGCTGG GCGCGGCGCT GATGTTGGCC GCATGGCGTG CCAGCCAGTC GATGTCGACC
GACGAGCGCG CGAGTATTGT CGATTCGCTC GCGATCGCCT TCATGATTGC GGGGCTCCTC
GGCACGCTGG CGCAATGGGT GCAAGTCTTC CATCTGGAAG ACCAAGCGTT CAACCTCGTA
TCTGAATATT TCTACGACAA CAACCGCCGC CTCTGGGGCA ATCTGAACCA GCCGAATCAT
CAGGCCACGA TTCAGGGCCT GGCACTGGTG GCTTCGGTGT GGCTCGCCAC GCGTGGGTGG
CTGCGGTTTC CGGGCTGGCT CGTCGCGGTG CTGCTGCTGG AAAGCGGCAT CGTGTTGAGC
GGGTCGCGCA CGGGCGTGCT GCATATCGGA TTGGCTGCGC TGTACGCGCT GATCGCCGCG
CATCTGGCAC GGGGCACACC TCGCGGCACG GATCCGATGC ATCGCGCGCC GGGGCTGATT
GTCGCGGCAG TGCTGATGGT CGTCGGCATC GTGGTGCTCC AGCCAGCCAT CAAGCACGCT
GGTCAGTTGT TCGACTGGCG GCTGTTCGAC ACCGTCGCGC AACTCCAGTC CGGTGATCAG
GTTTCCGCCC GCGGCGCCTT GTGGGCACAT GCCTGGGCGA TGTTCCGCGC GCATCCACTG
CTTGGGGTTG GCTATGGCGA GTTCGGCTGG GCCCAGTTCC AGCAGATGGC CGAGGTTGGC
AAAACGGCCG AGATGTCGCT GCATGCGCAT AACGCAGTAC TCGATCTGCT GGCCAAGACG
GGTCTGGTCG GTACGATCGG CGTGGCGCTG GTACTGGTAG GGTGGCTCTG GCGCGTGGTG
CGCGATCGGA TCTGGGCAGC TTCGTCGAGC GAGCGCGCCA TGGCCGTGCC GATGCTGTTC
TGGCTGGCGA TGTATGGGGC GCACTCGATG CTCGAGTATC CGCTGCACTA CCTGTACTTC
TTCCTGCCGT TCTGTTTCCT GCTGGCGTGG CTGGAGCCGT CCGGCTTTGG CAAGCGCTTG
CCGCGTGCCG TTCCGGCGAT AGCGTGTGTG TTGTTCATCG TTGTGTCCGC CTTCTTGCTT
GTGACGCTCT GGCAGGACTA CAAGCGTGTC GAGGCACGCG AGTATGCGCA TGAAGATAAG
CGGGATAGCC TGCCGATGCC CAGGCTCTGG TTCCGCCAGC ACGCGGCATC GGACACCGTC
GAGCACGCCA GGATCACGCC GGACAATGCT GCCAGCTTGC TGCCGGCGCA TATGGCCGCA
TTGCATCTGC TGCCAACGCC GAACCTCATC GGGCGCACCG CCTGGTTGCT CGCGTTGACC
GGTGATCAGG CGAAAGCACG CCAGTGGGTG GAGCGCTTGC CGTACTACTT TCAGGGCGAC
GAGGCGACGA TCTTAGAGAT GCTCTCACGC GACTGCGACG CGTTAGGCGC CGACCGCAGG
CCCCGCGAGT TCTGCGCCTG GGCGCGCCTG CGCGCCCGGC GCGGTTGA
 
Protein sequence
MPAPRATLPA TAIVVAFTLP LLVSKHTLPL ATFYGEWTAG LLGVFLIIAL ALRPSQSGSR 
ASRSFPWIML LPIWLIVTTV AQAVTGMVDV TGSRQLTQIV LALGAALMLA AWRASQSMST
DERASIVDSL AIAFMIAGLL GTLAQWVQVF HLEDQAFNLV SEYFYDNNRR LWGNLNQPNH
QATIQGLALV ASVWLATRGW LRFPGWLVAV LLLESGIVLS GSRTGVLHIG LAALYALIAA
HLARGTPRGT DPMHRAPGLI VAAVLMVVGI VVLQPAIKHA GQLFDWRLFD TVAQLQSGDQ
VSARGALWAH AWAMFRAHPL LGVGYGEFGW AQFQQMAEVG KTAEMSLHAH NAVLDLLAKT
GLVGTIGVAL VLVGWLWRVV RDRIWAASSS ERAMAVPMLF WLAMYGAHSM LEYPLHYLYF
FLPFCFLLAW LEPSGFGKRL PRAVPAIACV LFIVVSAFLL VTLWQDYKRV EAREYAHEDK
RDSLPMPRLW FRQHAASDTV EHARITPDNA ASLLPAHMAA LHLLPTPNLI GRTAWLLALT
GDQAKARQWV ERLPYYFQGD EATILEMLSR DCDALGADRR PREFCAWARL RARRG