Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rmet_0192 |
Symbol | |
ID | 4036977 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Cupriavidus metallidurans CH34 |
Kingdom | Bacteria |
Replicon accession | NC_007973 |
Strand | + |
Start bp | 198697 |
End bp | 202080 |
Gene Length | 3384 bp |
Protein Length | 1127 aa |
Translation table | 11 |
GC content | 61% |
IMG OID | 637975564 |
Product | putative type-4 fimbrial biogenesis pily1-related protein |
Protein accession | YP_582347 |
Protein GI | 94309137 |
COG category | [N] Cell motility [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG3419] Tfp pilus assembly protein, tip-associated adhesin PilY1 |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 17 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 12 |
Fosmid unclonability p-value | 0.48482 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGATGAGAA ATCCTCCACG TCTCGCATTG GTGGCCTCGG CCGTGGCGGC GCTGCTTGCT GCGCAGGCTC GCGCGGTTGT GATTCAGGAC AATCTGAATG GGGCATCGTC CAGCTATCCA TGGACCGCAA TCAATGGTGC CTGCCTGACC GCTGGCGATG GCTCGGGGAC GATCCCTGGA TGCACGGCAT CAAGCTTTAC GTACTACTCG AGCAAGAGTT CGAAGCTCGT GGGCGGCGTG ACAGGAACGC TTCCAGATAC GGCTGGCTCC GGCGCGCTTC GGTTGACCAA TGGTGACACG GGTAAGGGTT CGAACGGGAA CAGCCAGAAC GGCGCTGTCG TATCGAACTT CACCTTCCCG ATGCAGGAGG GCTTGCAGGT TACGTTCTCC ACCGTGACCT ATGGCGGCAA TGCATTCGGC AATACCGGTG CCGACGGCAT CAGCTTCTTC CTTGCCGACG GCAATCAGGC CGCGAGCGTC GGGGCGCTGG GTGGCAGCCT GGGATATAGC TGCTCCAACG TGAACGCTGT CTATGACGGG GTGGTTGCCG GTTACATCGG GATCGGCATC GACGAGTATG GCAACTTCTC CAATGGGAGT TCCGGTGGCT CCAAGAATGA CAACACCAGC ACTGGACCGG GTTTCAAGGC GAACCGGATC AGTATTCGTG GCTCGGGGAA TACGAACTGG GCAAATCTGC TGGCGACCTA CAACTCGTAC TACAAGAAGG TCCCCACATC GAAGATTCCT ACTGCGGTGC AGAACACGTG CGCTGCAGGA TATGTACAAG ACTGGTCGAG TGGCAAGGAC AATGGCTCGG TAACAAGCAA GCCACTGGCC TACAACTACA ACTTCATTGC ATCGAGCGAT CTGCCGAACG CGATCGCGAA CCAGCAGGCC ACAGCCACGC CAACCCGTGG CAAGGCCATC CCGATCGTCT ACTCGCTCAA GCTCACGCAA AACGGACTGC TGAGCATGTC GTACAGCTAT AACGGCGGTG CGGCCACGCC AATCATCACG AACCAGGACA TCACGAAGTC GAACGGACCG GTGCCGACCC AGTTCCGTTT CGGGTTTGCC GCTGGCACCG GTAGCGGTAG CAACGTTCAT GAGATTACCT GTTTCAAGGC GGAGCCTGTT GGTCAGTCAA GCAGTTCGGC AGGCACCAAC GTGCAGCAGT CCGCGCGCGT GGAAGCTGGA TCGCAGGTGT ACCTGGCCTA CTACCATCCG ACCAACTGGT GGGGAGAGCT GAGCGCGCAG AACCTGCTCT ACGACGCTTC GAGCGACACG GTCTCGATGA GCACCACCGC CAACTGGAAT GCAAGTTGCG TGCTGACCGG TGGAAGCTGC CCGTCCACTG GCGGCACCAA CACCGCGCAA TCTCCGACCG CGCGAAAGAT CCTCACCTGG AGTGGCTCGA CTGGCATCCC CTTCCGCTGG GATAGCACCT ATACGCCGCC AGCTGCCGTG CAGACACTCA TGACCGCGGG CGACGCCAGT GCGACCAACA AGCGCCTGAA CTATCTGCGC GGCGACCGTA CCAACGAGAT CACGACATCA GGAACGGGTT TGTATCGCGC ACGCACGGGC GTGCTGGGCG ACATCATGGA TTCAAGTCCG ACCTGGGTGG GGGCGCCTTC CTCGCCCTAC AGCGGGCCCT GGACGGACGC CCTGTACAAG ACCGCCACCG CTGCAGAGCC AAAAGGCAGC TATGACACGT TCAAGCAGAA CAACGCGCTG CGCCAGAATA TCGTCTACGT CGGGGCCAAC GATGGTCTGC TGCACGGCTT CCGTTCCGGC TACTACGACG CGGGCGGAAA CTTCGTCGGC AGCGATGCCA GCAAGCCGAA TGACGGGAGC GAGGCGATCG CTTACATGCC GGGCGCCGTG CTGAAGACGA TCCATTCCTC GACCAGTGCG CTGGACCTCG CCTCGGCGCA GTATGTGCAC AACTACTTCG TGGATGCGAC GCCAGGCACG GGCGATCTCT ACTATCAGAA TGCCTGGCAT ACGTGGCTGG TTGGAGGCCT CGGTCCCGGC GCGAACGCAA CCGGGCCGAT CGGCGACAAG ACGACGACGG GTACGGGTGG TGCCATCTAC GCGCTCGATG TCACGAACCC TGCCGGGTTT GCCGATGACG CCGCAACGGC AAGCAGCCTG GTAATCGGCG AGTGGGACAA CACGCTGAAA TGCACCGGTA ATACCGGCTG TGGCACGAAC CTTGGAAACA CCTACGGCAC ACCGGTGATT CGCCGCCTGC ACAACGGCAA CTGGGCGGTG CTGTTCGGCA ACGGCCTGAA CAGCGCATCC GGCTCGGCGG GACTGTATGT GATGCTGGTC AACCCGGCGG ACGGCTCAAA GTCGTTCCTG TACCTGGATA CGGGATACGG TCCGGCCAAG GATCCGGCCG GCAAGAATTC CAAGAATGGC ATTGCCTATG TGACACCCGC GGATCTCGAT GGCGACCACA TTACCGACTA CGTCTATGCC GGCGATATGT TCGGCAATGT CTGGCGTTTT GACCTGACTT CGAACACGCC TGCCAACTGG AGTGCGTCGG CCAAGCCGCT GCTGGCCACC GGGCTCCCCA TTACCAGCAA GGTTGCCGTG GCTGCCGTGC CCGGCAGCGG CACCGGGGCC AATGCGATAC CGCGTGTCAT GGTCAGCTTC GGCACCGGTC GTCGCCTGGA ACAGACGCAG AGCAGCGAAG CTGTGTTCGA GAGCGCCACC CAGTCACTTT TCGGTGTGTG GGACTGGAAC ATGACGGCAT GGAACGGCGT GGCCCCGGCC AGCGCGAAGT ATGCGGCGTT GGCAACCGCG CCGCAGCCGC TGGCAATCGC CAACCTTACG GCGCAGTCGA TCACCAACGA AGGCCGCGCC AGTTCGAATA CCGCGATGTT GCGCACGGTC AGCGCCACCG CCGTCTGCTG GCAGGGCAGT ACCGTTTGCT CCAGTGGCAA CACCAAGTAT GGCTGGCAAT TGCCGCTGTC CACGAATCCT GGCGAACAGG TGATCTACAA CCCCGTGATC GCATACGGAA TGTTCATCGT CAATACGACG ATCCCACCGA GTTCGGCGGC TGCGCAGGCG CTCTCCTGCA ATACGGAGGT GCCTACTGGA TTCACGATGG GGGTTTCCAT GGCCACTGGC GGCGCGGCAT CCCAATCCTT CTTCAGTACT GCCAACAGCA ACACATTCCC GCTGCTTAAT GGCGGAATCG TCAGCGGCAT TGGCCTGAGC GGTACGGGCT CCCCGTCGAT CGTGACAGCG CAGAAGAGAC CGTACATCGT GCAGCAGACG GTTGGGGGCA CGGGCGTCGT TACCCAGATC AACCCCGGTG CCAATGCCAC GGGATCACGC ATCAACTGGA TCAAGTTGCG CTAA
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Protein sequence | MMRNPPRLAL VASAVAALLA AQARAVVIQD NLNGASSSYP WTAINGACLT AGDGSGTIPG CTASSFTYYS SKSSKLVGGV TGTLPDTAGS GALRLTNGDT GKGSNGNSQN GAVVSNFTFP MQEGLQVTFS TVTYGGNAFG NTGADGISFF LADGNQAASV GALGGSLGYS CSNVNAVYDG VVAGYIGIGI DEYGNFSNGS SGGSKNDNTS TGPGFKANRI SIRGSGNTNW ANLLATYNSY YKKVPTSKIP TAVQNTCAAG YVQDWSSGKD NGSVTSKPLA YNYNFIASSD LPNAIANQQA TATPTRGKAI PIVYSLKLTQ NGLLSMSYSY NGGAATPIIT NQDITKSNGP VPTQFRFGFA AGTGSGSNVH EITCFKAEPV GQSSSSAGTN VQQSARVEAG SQVYLAYYHP TNWWGELSAQ NLLYDASSDT VSMSTTANWN ASCVLTGGSC PSTGGTNTAQ SPTARKILTW SGSTGIPFRW DSTYTPPAAV QTLMTAGDAS ATNKRLNYLR GDRTNEITTS GTGLYRARTG VLGDIMDSSP TWVGAPSSPY SGPWTDALYK TATAAEPKGS YDTFKQNNAL RQNIVYVGAN DGLLHGFRSG YYDAGGNFVG SDASKPNDGS EAIAYMPGAV LKTIHSSTSA LDLASAQYVH NYFVDATPGT GDLYYQNAWH TWLVGGLGPG ANATGPIGDK TTTGTGGAIY ALDVTNPAGF ADDAATASSL VIGEWDNTLK CTGNTGCGTN LGNTYGTPVI RRLHNGNWAV LFGNGLNSAS GSAGLYVMLV NPADGSKSFL YLDTGYGPAK DPAGKNSKNG IAYVTPADLD GDHITDYVYA GDMFGNVWRF DLTSNTPANW SASAKPLLAT GLPITSKVAV AAVPGSGTGA NAIPRVMVSF GTGRRLEQTQ SSEAVFESAT QSLFGVWDWN MTAWNGVAPA SAKYAALATA PQPLAIANLT AQSITNEGRA SSNTAMLRTV SATAVCWQGS TVCSSGNTKY GWQLPLSTNP GEQVIYNPVI AYGMFIVNTT IPPSSAAAQA LSCNTEVPTG FTMGVSMATG GAASQSFFST ANSNTFPLLN GGIVSGIGLS GTGSPSIVTA QKRPYIVQQT VGGTGVVTQI NPGANATGSR INWIKLR
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