| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rmar_2841 |
|---|
| Symbol | |
|---|
| ID | 8569512 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodothermus marinus DSM 4252 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013502 |
|---|
| Strand | - |
|---|
| Start bp | 44730 |
|---|
| End bp | 46307 |
|---|
| Gene Length | 1578 bp |
|---|
| Protein Length | 525 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | |
|---|
| Product | CRISPR-associated protein Cas1 |
|---|
| Protein accession | YP_003292096 |
|---|
| Protein GI | 268318378 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 2 |
|---|
| Plasmid unclonability p-value | 0.00141566 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCAGGTTT CGCACGAGGG GGTTTGCTGG CCGGTGGCAT GGGTGTACGA GTTTGCCTAC
TGCCTGCGGC GGGGCTACTA CGCCTGGGTT GAAGGGCCCG GAGAGCCTGT TGCGCTGGAT
ACCGGAGAAG GCGTGTGGCT GGCCTCGGAC GCCTGGTGTG GGCCGGTGCG GTGGGTACAG
GACGGTGCCG GTTGTCCCGT TCCCCTGCTA CGGGTGCCCC GGGCATGCGC CGACGATTCC
GACAGACGCC CCGAACATCT GATGCTGGCG GCCCTTGCCG ATCTGGTGGA GGCGCATACA
GGGCAACCAG TGCGTCGGGG TCTTGTTCTC GACGCAACAA CAGGGCACCG GGAAGAGGTA
ACGCTCGACG AAACGTTACG GGCGGCCTGG CAGTCGCTCG ACAGGCGTAT TCGGGCCGTC
ATTCATGAAG GAAGCGTGCC GCCGCCAAGG GCCGACGGGC GCTGCCATCA CTGCCCACGT
CTGGAGGTGT GCCGACCTTT TGACGGCCAT TCGAAAGAGG ATGCGGTGGC GATCATGCCA
CCGGTTCGGC AGGCACGTAC GCTCTACGTG GACGAGATCG GAGCGGTCGT ACGCCGCAAG
GGACGGCAGC TTGTCGTCAC CGTCAGCCGC GACGGCAGGC GGCAGGAACT GCTGCGTGTG
CCCGCCCTGC TGGTGGATCA GGTGGTGCTG GTCGGACCCG TCCAGATCAC CTCGCAGGCG
CTGCGGATGC TGCTACGTCG GAACGTGGAT ATCGTGTATC TATCAGGCGA GGGACGCTTC
GAGGGAAGGC TGGCGGCTGA GTTCCATCCG CACGTGGCAT TGCGGCTGGC ACAGTACGAG
GCCTTTCGCG ATCCTGAGCG GACCCTTACG CTGGCCCGCC TGTTTGTGCG GGGCAAGTTG
CAGAACATGG CCGGCCTGTT GCGCCGCTAT GCCGACGAGT ATGGCAGCGC TTCGTTGCGC
GCCGCGGCTT CCGAAATCAA CCGCGATCTG GAGCGCCTCG AGCAGGTTAC CACGCTGGAG
GCGTTGCGCG GTGTGGAGGG CACGGCAAGC CGACGCTACT TTTCGGTTTT CGGCGAAATG
CTGCGTGCCG AGGCCTATGC CCCGACCGGC TGGCCCGCGT TCCCGGGGCG CCACCGGCGA
CCGCCTACCG ATCCCGTCAA CGCCACGCTG GGCTATCTCT ACGCGTTGCT ACTGGGTAAC
GTGGTGGCGG CCTGCGCGCT GGCCGGGCTG GATCCCTACG TGGGCTATCT ACATGCGCCG
GCTTACGGGC GCCCGTCGCT GGCACTCGAC CTGATGGAAG AGTTTCGCGC GCCCGCGGCC
GATCGGCTTG CGCTGCGGCT GTTCAACCGG GGACGACTGC GGCCCCAACA CTTCGAGGAG
CGCAACGGCG GGGTGTACCT GAACGAAGCG GGCCGAGCCG TCGTGCTGGA AGCCTGGCAG
GCGCACCGCC AGCAAACCTC GGCGCATCCG GTGCTCGGCA TGGAGTTGTC GCTGGCCCGG
CATTTCGAGG CGCAGGCCCG GCTGCTTGCC CGGGCGCTTC AGGAGCAGGG TATCGCCTAC
ACGCCATTTG TCGCATAG
|
|---|
| Protein sequence | MQVSHEGVCW PVAWVYEFAY CLRRGYYAWV EGPGEPVALD TGEGVWLASD AWCGPVRWVQ
DGAGCPVPLL RVPRACADDS DRRPEHLMLA ALADLVEAHT GQPVRRGLVL DATTGHREEV
TLDETLRAAW QSLDRRIRAV IHEGSVPPPR ADGRCHHCPR LEVCRPFDGH SKEDAVAIMP
PVRQARTLYV DEIGAVVRRK GRQLVVTVSR DGRRQELLRV PALLVDQVVL VGPVQITSQA
LRMLLRRNVD IVYLSGEGRF EGRLAAEFHP HVALRLAQYE AFRDPERTLT LARLFVRGKL
QNMAGLLRRY ADEYGSASLR AAASEINRDL ERLEQVTTLE ALRGVEGTAS RRYFSVFGEM
LRAEAYAPTG WPAFPGRHRR PPTDPVNATL GYLYALLLGN VVAACALAGL DPYVGYLHAP
AYGRPSLALD LMEEFRAPAA DRLALRLFNR GRLRPQHFEE RNGGVYLNEA GRAVVLEAWQ
AHRQQTSAHP VLGMELSLAR HFEAQARLLA RALQEQGIAY TPFVA
|
|---|
| |