| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rmar_2540 |
|---|
| Symbol | |
|---|
| ID | 8569206 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodothermus marinus DSM 4252 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013501 |
|---|
| Strand | - |
|---|
| Start bp | 2950825 |
|---|
| End bp | 2954889 |
|---|
| Gene Length | 4065 bp |
|---|
| Protein Length | 1354 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | |
|---|
| Product | ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent |
|---|
| Protein accession | YP_003291804 |
|---|
| Protein GI | 268318085 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCAAAGT CCCCCCGCAA GTCGTCGGCA GACACCCCGG AGCTCCGTCG CGGGCTGCGC
ATCGAGCGCG TATTTTCGCA GGAAGGCGTT CATCCGTTCG ACATGGTCAC CTGGGAGCGC
CGAACGGCCG CCATCTACAA CAGCAAAGGC GAAGCGGTTT TCGAGCAGAA GGACGTGGAA
TTTCCCTCGA CGTGGAGCCA GCTCGCCACG AACGTGGTCG CGTCCAAGTA CTTCTACGGC
GATCTGGCGG CCGGCAATGG CGATCCCCGC GAGGGCAAGC GGGAGTACAG CCTGAAGCAG
CTCATCCACC GGGTGACGCG CACAATCGCC GACTGGGGCA AGGCCCAGGG CTATTTCGCC
ACGCCGGAAG ACGCCGAGCG CTTCTACGAT GAGCTGACCT GGCTCTGCCT GCACCAGTAC
GGCGCTTTCA ACTCGCCGGT CTGGTTCAAC GTGGGCCTCT ACCACCAGTA CGGCGTGCGC
GACACGGGCA GCAAGACGAT CTACGGCTGG GATTTCGAAA AGCAGCGGGT GGTGCCCGTC
GATCCCTACG AGCGGCCCCA GGCCTCGGCC TGCTTCATCA TTTCGGTAGA GGACTCGATC
GACGACATCT GGCAGCTCAT GGCCGAAAGC GCCCGCCTGT TCAAGTTCGG TTCGGGCGTG
GGCGCCGACT GGTCCAAGCT GCGCTCGACG AAGGAGAAGC TTTCAGGCGG TGGTCGGCCT
TCGGGTCCGG TTTCGTTCAT GCGCGTGCAG GACGCCACGG GCGCCACGAT CAAGTCGGGG
GGGAAGACGC GCCGGGCCGC CATCATGCAG ACGCTGAAGG TCTGGCACCC CGACATCATG
GAGTTCGTCA CGGCCAAAGC TAAAGAGGAA AAGAAGGCCT GGGCCCTGAT CGAGCAGGGC
TACGACGGCT CGTTCAACGG CGAGGCCTAC AGCTCGGTCG CCTTCCAGAA CGTGAACCAG
TCCGTGCGCG TCACGGACGA ATTCATGGAG GCCGTGCTGG CCCGCAGGAA ATTCCCGCTC
AAGGCCGTGA CGACAGGCAA GGTTATCGAG GAGATCGACG CCTACGAACT GCTCTACAAG
GTGGCCGAGG GTACCTGGAT CTGCGGCGAT CCGGGCCTGC AGTACGAGGA CACCATCCAG
CGCTGGCACA CCTGCAAAAA CAGCGGGCCG ATCAACTCCA GCAATCCGTG TGTGACGGGC
GACACGCTGG TGGCCACCGA GGATGGATTG CGGCGCATCG ACAGTCTGGT GGGTGAAACA
CCGCGGGTAG TCGGACTGGA CGGACGCCTG CATCGGACCA CCCGGGTGAT CGAGACGGGC
GTCAAGCCGG TCTACCGACT GCGCACCCGT TGCGGTTATG AGGTGAAGCT GACGGCCGAT
CACCCGGTGT GGACGGAAAA CCGCGGTGAT GTGCCGGCCG CCGAACTGAC TCGCAACGAC
ATCGTGCGTC TGGTGCCGCC GCGCTTCGGT CGTGAGCATC TGGATCCTGA AGTGGCCGAG
TACATCGGTC TGATGGTCGG GGACGGTTGC ATTTCGCATG AAGTGGCCAC TTTGATGTTG
GATCGGCGGG AAAAGGCTGT GGCCGAAAAA GTCGCTCAGG TTGTCAATCA GTTTGATCGA
CAGACCCATT TTGAAGGTGT TCGGGTGGCA GAGCGGCCTA CCGGAGTTGC CGTTGCTACT
GGCGCTCGAG CCGTACAGGA GGTTTTGAAG CGGTTTGCTG TGCTGGACGA GGGTTCGTCA
GCAAAACGAT TTACTGAGGA AGTCTTTCGG CTGGATCGAC AGAGTGTGGC GGCGCTGCTA
CGAGGACTGT TTACGGCCGA TGGCACGGTA GCCAACTATG GTAGAAAGAG CCAGTACATC
AGCTTGGAAT CGACTTCGCG CGAACTCCTG AAGCAGGTTC AGCTGCTTCT GCTGGGCTTT
GGTATCAAGA GCAAGCTGTA TGAAAACCGG CGTTTGACCG ATCGTGCATT GTTGCCGGAC
GGTAGAGGTG GGGTAAAAGA ATACCGCGTT CAGCCTCTAT ACAGTCTGCG CATTAGCCGG
TCGAGCCGGG TCCGCTTTGA GCGAGAGATT GGTTTTCTGC CGGAGAGTCC GAAGGCGGCC
GCCCTGCGTG AGCTGAATGC TACCGTGTCG GCGTACGAAG ATCCGCTGGT CGATCAGGTT
GTTTCGCTTG AACTGCTGGG TGAGGAACCT GTCTACGACC TGACGGAGCC GGTTACGGAT
CACTTTGTGG CCAACGGCAT CGCCGTCCAC AACTGCTCCG AATACATGTT CCTCGACAAC
TCGGCCTGCA ACCTGGCCTC GCTGAACCTG CGCAAGTTCC AGCGGGAGGA CGGGTCGTTC
GATGTCGAGC GTTTCCGGGC GGCCGTGCGG ATTTTCATCA CGGCCATGGA AATCCTCGTG
GACAATGCCG GCTATCCGTC GGAAAAGATC GCCCAGAACA GCCACGACTA CCGGCCGCTG
GGACTGGGCT TTGCCAACCT GGGCGCCATG CTGATGGCCA TGGGGCTGCC CTACGACAGC
GATGAAGGAC GGGCTGTGGC CGGTGCCATC ACGGCGATCA TGCACGCAGA AGCCTATGCC
CGGAGCGCCG AGATCGCGGC CATCGAGCAC ATCGGGCCGT TCCCGGGCTT CGAAAAGAAC
CGGGAGCCCA TGCTCGAGGT GATGCGCATG CACCAGGCGG CCGTCGAGGA CATTCATCTG
AGTTGTCCGG CCTACCTGAA AGAAGCCGCC CGCGAAAGCA TGGCGCGCAT GGTGGCGCTG
GGCGAACGCT ACGGCTACCG CAACGCCCAG GCCACGGTAC TCGCGCCCAC CGGGACCATC
TCGTTTATGA TGGATTGCGA CACGACGGGC ATCGAGCCGG ACATCGCGCT GGTCAAATAC
AAGCTGCTGG CGGGCAAGGG CGATGGCATG TTCAAGATCG TCAACAACAC GGTGCCCATC
GCCCTGCGCC GCCTGGGCTA CAGCGAGGAG CAGATCAAGG ACATCCTGGC CTACATCGAA
GAAAACGACA CGATCGAAGG CGCGCCGCAC CTGAAAGAAG AGCACCTGCC GGTCTTCGAC
TGCGCCTTCA AGCCCTACAA GGGCCAGCGC TTCATCCACT ACATGGGCCA CATCAAGATG
ATGGCCGCCT GCCAGCCCTT CATCAGCGGT GCCATCTCCA AGACCGTCAA CATGCCCGAG
CACGTGACGG TCGAGGAAAT CATGGACGCC TACATCCAGG GCTGGAAGCT CGGGCTCAAG
GCGCTGGCCA TCTATCGTGA GAACTCCAAG CGGAGCCAGC CGCTCTCGAC GCGCAAAGAA
GACAAGAAGG GCGAGACGAG CGGCGACGGC ATGGCGACCG GCGAGCCGAA GGTCATCGAA
AAGGTCGTCG AGAAGATCGT CTACAAGCCG GTGCGTAAGC GGCTGCCCGA CGAGCGGCCT
TCGATCACGC ACAAGTTCTC GGTGGCTGGC CACGAAGGGT ACCTGCACAT CGGCCTGTAC
CCGGACACCG GCATGCCGGG CGAGATCTTC ATCACGATGG CCAAGCAGGG CTCGACGATC
TCGGGATTGA TGGACGCCTT TGCGACGGCC ATCTCGATTG CGCTCCAGTA CGGCGTGCCG
CTCGAAGACC TGTGCAACAA GTTCAGCCAC ATGCGCTTCG AGCCGGCCGG CTTCACGAAC
AACCCGCAGA TTCCGATCGC CAAGTCCATC ATGGACTACA TCTTCCGCTA CCTGTCGCTC
AAATTCCTGG GACGGCCGCA GGAAGAAAAG CAGGAAAATC CACGCGACGG GGTGGCGGCC
GAGGTGAAAC GCAGCGGTCC GGCCCGTGAT GAGCGGCAAC TGGAGCTGAG CTTCGAGCCG
CAGCCGACCG GCAAGGTGAC GCCGCTGGTG GGACAGACGA TCGAAACCTT CCTGCAGACG
CAGCAGAAGA GCGCGGCCGC CGCGCCGGAA GCCGCTGCGG TGCCGACGGT GTCGTTCCAG
AACCAGGAAG ACGCGCCGGC CTGCTCGAAC TGTGGTTCGA TCACCGTGCG CTCGGGCGCC
TGCTACGTGT GCCCGAACTG CGGTAGCTCG AGCGGTTGCG GCTGA
|
|---|
| Protein sequence | MAKSPRKSSA DTPELRRGLR IERVFSQEGV HPFDMVTWER RTAAIYNSKG EAVFEQKDVE
FPSTWSQLAT NVVASKYFYG DLAAGNGDPR EGKREYSLKQ LIHRVTRTIA DWGKAQGYFA
TPEDAERFYD ELTWLCLHQY GAFNSPVWFN VGLYHQYGVR DTGSKTIYGW DFEKQRVVPV
DPYERPQASA CFIISVEDSI DDIWQLMAES ARLFKFGSGV GADWSKLRST KEKLSGGGRP
SGPVSFMRVQ DATGATIKSG GKTRRAAIMQ TLKVWHPDIM EFVTAKAKEE KKAWALIEQG
YDGSFNGEAY SSVAFQNVNQ SVRVTDEFME AVLARRKFPL KAVTTGKVIE EIDAYELLYK
VAEGTWICGD PGLQYEDTIQ RWHTCKNSGP INSSNPCVTG DTLVATEDGL RRIDSLVGET
PRVVGLDGRL HRTTRVIETG VKPVYRLRTR CGYEVKLTAD HPVWTENRGD VPAAELTRND
IVRLVPPRFG REHLDPEVAE YIGLMVGDGC ISHEVATLML DRREKAVAEK VAQVVNQFDR
QTHFEGVRVA ERPTGVAVAT GARAVQEVLK RFAVLDEGSS AKRFTEEVFR LDRQSVAALL
RGLFTADGTV ANYGRKSQYI SLESTSRELL KQVQLLLLGF GIKSKLYENR RLTDRALLPD
GRGGVKEYRV QPLYSLRISR SSRVRFEREI GFLPESPKAA ALRELNATVS AYEDPLVDQV
VSLELLGEEP VYDLTEPVTD HFVANGIAVH NCSEYMFLDN SACNLASLNL RKFQREDGSF
DVERFRAAVR IFITAMEILV DNAGYPSEKI AQNSHDYRPL GLGFANLGAM LMAMGLPYDS
DEGRAVAGAI TAIMHAEAYA RSAEIAAIEH IGPFPGFEKN REPMLEVMRM HQAAVEDIHL
SCPAYLKEAA RESMARMVAL GERYGYRNAQ ATVLAPTGTI SFMMDCDTTG IEPDIALVKY
KLLAGKGDGM FKIVNNTVPI ALRRLGYSEE QIKDILAYIE ENDTIEGAPH LKEEHLPVFD
CAFKPYKGQR FIHYMGHIKM MAACQPFISG AISKTVNMPE HVTVEEIMDA YIQGWKLGLK
ALAIYRENSK RSQPLSTRKE DKKGETSGDG MATGEPKVIE KVVEKIVYKP VRKRLPDERP
SITHKFSVAG HEGYLHIGLY PDTGMPGEIF ITMAKQGSTI SGLMDAFATA ISIALQYGVP
LEDLCNKFSH MRFEPAGFTN NPQIPIAKSI MDYIFRYLSL KFLGRPQEEK QENPRDGVAA
EVKRSGPARD ERQLELSFEP QPTGKVTPLV GQTIETFLQT QQKSAAAAPE AAAVPTVSFQ
NQEDAPACSN CGSITVRSGA CYVCPNCGSS SGCG
|
|---|
| |