Gene Rmar_1428 details

Gene Information

• Locus tag: Rmar_1428
• ID: 8568079
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Rhodothermus marinus DSM 4252
• Kingdom: Bacteria
• Replicon accession: NC_013501
• Strand: +
• Start bp: 1663168
• End bp: 1666584
• Gene Length: 3417 bp
• Protein Length: 1138 aa
• Translation table: 11
• GC content: 69%
• Product: Tetratricopeptide TPR_2 repeat protein
• Protein accession: YP_003290703
• Protein GI: 268316984

Plasmid Coverage information

• Num covering plasmid clones: 6
• Plasmid unclonability p-value: 0.230338
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGCCACGTC CGGCCATAAC CGTTGCGCTG TGGGTTCTGC TGATCCTGGG CGCGGCCGCC 
TGCCGCCGCG CCCCTTCGGT CCCGGAACCC GGCACCGACA CCTATCAGGA AACCGTCACG 
GCTTTTTACA CGGGACTGGC CGCCCTGCAG GCCGGCGAAG ACCGGGGCGC CCGCACACTG 
CTGGAGCGGG TGACCGAGCT GGCCCCCGGC GAGCCGGCCG CCTGGGCCAA CCTGGGCCTG 
CTCGCGTTGC GCCGCAACGA CTTGGAGGCC GCCCGCCGCT ACCTTGGCGA AGCCGCCCGC 
CTAGCGCCCG AAAGCGCCCG CATTCAGGTA CTGCTGGCCC GCCTGGCCCT GGCCGAAGAG 
CAGCCGGACG CGGCCCGTCG TCACCTGCTC GCCGCTCTGC AGCACGACCC CGCCGACCTC 
GAAGCCGCCT ACCTCCTCTT CCAGCTCCTT GAAGCCCACC CGACGCCCGG CGACACGCTG 
ACGGCCGACA CGCTGCTGGC CCGGATGTTA CGCCACCGCT CCGACAATCA GGCGCTCTGG 
CTGGAGCGCC TGCGCCGGGC CATCGCCACA CAGGACGCCC GGACGCTGCA GGAAACGATC 
GCCCACCTGC AAGCGCTTGT CGATACCTGG CCCGACGAGG CGCGGACGGT CTGGCAGGAG 
CTGCTCGCAC TGGCCCGTGA AGCCGACTGG ACGGCGCTGC GCACTCAGGT GGCTTTTCTC 
CGCAATACCC TGCTCCAGCA CCCGGCCTTC CGGGCCGATC TGGCCGAACT GCAACCCCCG 
CCGGAAGTGC TGAGCCCACC GCTTACCGAG CCGTTGCGTC TGGAGCCTCC CCGGGCCACC 
TTCGCCCTGC CCGACACGCT GATGACGTTT CAGCCCGAGC CGCTGACAGG CGGCCCGGCG 
CTGGCGACGC GCGTGCTCTG GAAAACCGCC GACGCCAGTC CCTCGGTGCT GCTGGTACGC 
GCGCACGACG TGGTGCTTGA TGACGGCACC GTGCTGCAAC GCCCGGATCC GTTACCGCCG 
ACGGCCACGC CCACCCACAG CGTCGCCCTG TTTGACTTCG ACAACGACTT TCGCATGGAT 
GTGGCGCTGG TGGGTAGCGC AGGCGTCCGG CTCTACCATC AGGAAGCCGG CGGTACCTTC 
AGCGAAGTCG CCCTTCCCCC GCTTCCAGCA GACGAAATCA CCGGCCTCTG GGTAGCCGAT 
TTCGATCTGG AGGGCGACCT CGACCTGCTG GTCGGCACCG CATCCGTTTT TTTGGTTAGC 
AATAACGGAG ACCAAACTTT CCGGACCCGC CGCGTCTTCG ACATCGCCCC TCGCCGACTC 
GCCTGGAGCG ACCTCGACGG CGACGGCGAT CCCGACCTGG CCGCGCTGGA CCTCAACGGC 
GTGCTCCACC TCTGGCGCAA CGAACGCCAG GGTCTCTTCC TGAAAGATTC GACCATACCC 
GCCCGCTCCG GCTGCACGCT CGCCGCCGCC GACCTCGACC ACGACGGCCT GCTCGAACTG 
ACGCTGTGGA GCCCGGACGG CTCGCTCCAC CGGCTCGCCT ATATGCCGCG CACCCGCTCC 
TGGGAAACCC GTCCGCTGCC CGTCCGAACC CCCGCGCTCG ACGAGTCCGC CTGTCGCCAG 
GCCCATCTCT TCACCGCCGA CCTTGACAAC AACGGCGCCC AGGACCTGAT TGCGTCAATC 
CCCGGTCGGA CCTGGATCTG GCTCGTTGAC GCCCGCGGCC GCCTGCGCTC CGAGCCGCTC 
ACACTCGATG TGCAGGCCTT CGATGCGGCC GACCTCGACG GCGACGGCCG CCTGGACCTC 
GCCGCCGTGC AATCGGACGG CACGCCCGTC CGCCTCCGCA ACCGGAGCGA CGCGCCGTAT 
GCCTGGACGC AACTTCATCC TCAGGCTGTC GTCGTGGGCG ACCAGCGCGT CAACAGCTTC 
GGCATCGGCG GCGTCGTCGA AATCCGCGCC GGCACGATCT ATCAGAAGCA GGTCATCCAG 
GCGCCCGTGG TGCATTTCGG GCTCGGACTG GAATCGCGCG TGCCACTGGC CCGCATCGTC 
TGGCCCAACG GCAACGTGCA GGCCGAATTC AACCTGGCCG CCAACGAAAC CGTCCAGGCC 
ACGCAACGCC TCAAGGGCTC CTGTCCCTGG GTCTTCGCGT TCAACGGCGA GCGCATGGTT 
TTCGTGACCG ACTTCATCTG GGGCTCGCCG CTGGGCCTGC GCATCAACGC CCAGGAGACC 
GGCGACATCG CCCAGACCGA GGACTGGATC AAGATCCGCG GCGACCAGCT CCGCCCACGC 
GACGGCATCT ACGACGTGCG CATCACGGCC GAGCTGTGGG AGACGCACTT TTTCGACCAC 
GTGTCGCTCA TGGTGGTCGA TCATCCGGAG GAGACCGAGG TCTGGGTGGA CGAACGCTTC 
GCGTTTCCGC CGCGTCAGCT CCGACTTTAC ACCACCGGCC CGGTGCAGCC CATCGCCCGT 
GCCCGTGATC ACCGGGGCCG GGATGTAACG GAAAAGGTGC AACGTCGCGA CGGCCGCTAC 
TTCGACACGT TCGCCCCCGG TGCGTACCAG GGGATCGCCG AGCCCCACTT CGTCGAGCTG 
GACCTGGGCG AAAGCGTCCC GGTCGACCGA CCGCTCTACC TGATCGCCTA CGGCTGGTTG 
CGTCCGACCG ACAGTTCGAT CAACGTGGCG ATCAGCCAGG GCCGCCATCC CCGGCCGCGG 
GGTCTGCGCA TCGAGGTGCC CGACGGCCGG GGCGGCTGGC GCGTGGCCTA CCCGGACCTG 
GGCTTCCCGG CCGGCCGGTT GAAGACGATC GTGATCGACC TGAGCGGCCA GTTTCCGGAG 
GGTGGTCCTT ATCGCGTGCG GCTTCACACG AACCTGGAGA TCTACTGGGA CTGGATCGGC 
TGGGCCGAAG CGCGTCCGGA CGTGCCGCTT CGCACCACGC GCCTGGCGCC CGAGCGGGCG 
CTGCTGCGCT ACCGGGGCTA CTCGGCCACC GTGCAACCCG AACGTTCCGC ACCGGAAGTC 
CCGATCTACG ATTCGCTGGC CGGCACGGCC CAGCGCTGGC GCGATCTGGA AGGCTACTAC 
ACGCGCTTCG GCGACGTACG CGAGCTGCTG GCCGAGATCG ACGACCGCTA CGTCATCATG 
AATGCCGGGG ACGAACTCGT CTTCCACTTC CCCGCCCTGC CCGATCCGCC CGAAGGCTGG 
ACGCGCGACT TCGTGCTCAT CGGCGACGGC TGGGTCAAGG ACGGCGACTA CAACACGACG 
TTCTCGCGTA CCGTGCGTCC GCTCCCCTAC CACGACATGC CCGGCTACGA CACACTGCCC 
GGTCGCCTGT GGGACGACCC GGTCTACCGA CGCTTCCCCG AAGACTGGCT GCGCTTCCAC 
ACGCGCTACG TCGCCCCGGA CCGCTTCGAC CAGAAGCTGG CGCTGCAGGC CCGGTAG 

 

Protein sequence

MPRPAITVAL WVLLILGAAA CRRAPSVPEP GTDTYQETVT AFYTGLAALQ AGEDRGARTL 
LERVTELAPG EPAAWANLGL LALRRNDLEA ARRYLGEAAR LAPESARIQV LLARLALAEE 
QPDAARRHLL AALQHDPADL EAAYLLFQLL EAHPTPGDTL TADTLLARML RHRSDNQALW 
LERLRRAIAT QDARTLQETI AHLQALVDTW PDEARTVWQE LLALAREADW TALRTQVAFL 
RNTLLQHPAF RADLAELQPP PEVLSPPLTE PLRLEPPRAT FALPDTLMTF QPEPLTGGPA 
LATRVLWKTA DASPSVLLVR AHDVVLDDGT VLQRPDPLPP TATPTHSVAL FDFDNDFRMD 
VALVGSAGVR LYHQEAGGTF SEVALPPLPA DEITGLWVAD FDLEGDLDLL VGTASVFLVS 
NNGDQTFRTR RVFDIAPRRL AWSDLDGDGD PDLAALDLNG VLHLWRNERQ GLFLKDSTIP 
ARSGCTLAAA DLDHDGLLEL TLWSPDGSLH RLAYMPRTRS WETRPLPVRT PALDESACRQ 
AHLFTADLDN NGAQDLIASI PGRTWIWLVD ARGRLRSEPL TLDVQAFDAA DLDGDGRLDL 
AAVQSDGTPV RLRNRSDAPY AWTQLHPQAV VVGDQRVNSF GIGGVVEIRA GTIYQKQVIQ 
APVVHFGLGL ESRVPLARIV WPNGNVQAEF NLAANETVQA TQRLKGSCPW VFAFNGERMV 
FVTDFIWGSP LGLRINAQET GDIAQTEDWI KIRGDQLRPR DGIYDVRITA ELWETHFFDH 
VSLMVVDHPE ETEVWVDERF AFPPRQLRLY TTGPVQPIAR ARDHRGRDVT EKVQRRDGRY 
FDTFAPGAYQ GIAEPHFVEL DLGESVPVDR PLYLIAYGWL RPTDSSINVA ISQGRHPRPR 
GLRIEVPDGR GGWRVAYPDL GFPAGRLKTI VIDLSGQFPE GGPYRVRLHT NLEIYWDWIG 
WAEARPDVPL RTTRLAPERA LLRYRGYSAT VQPERSAPEV PIYDSLAGTA QRWRDLEGYY 
TRFGDVRELL AEIDDRYVIM NAGDELVFHF PALPDPPEGW TRDFVLIGDG WVKDGDYNTT 
FSRTVRPLPY HDMPGYDTLP GRLWDDPVYR RFPEDWLRFH TRYVAPDRFD QKLALQAR