Gene Rmar_1222 details

Gene Information

• Locus tag: Rmar_1222
• ID: 8567869
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Rhodothermus marinus DSM 4252
• Kingdom: Bacteria
• Replicon accession: NC_013501
• Strand: +
• Start bp: 1429430
• End bp: 1431568
• Gene Length: 2139 bp
• Protein Length: 712 aa
• Translation table: 11
• GC content: 68%
• Product: DNA ligase, NAD-dependent
• Protein accession: YP_003290500
• Protein GI: 268316781

Plasmid Coverage information

• Num covering plasmid clones: 18
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGAGACGC ACACCGCACC GCAAACCGCC GAAGCACGCC TGCTGGAGGC CACACACACG 
CTGTTGCAAA CTGTCCGACA GCGCGACCTG GAAGCCATCG ACCGCAAGGA GGCCGAGGCG 
CTGGCGGCCC GGCTCCGGGA AGTGCTCAAC CAACACGCCT ACCGCTATTA CGTACTGGAC 
AACCCGCTCA TCCCGGACGC GGACTACGAC CTGCTCATGC AGGCGCTTCG GAAGCTCGAG 
GCGCGTTTCC CGGAGCTGGT CACGCCCGAC TCACCCACGC AGCGCGTGGG AGGACCGCCG 
CTGGGACGCT TCGAAAAGGT GCGCCATCCG GAGCCGCTCC TTTCGCTCAA CAACGCTTTT 
GGCGAGGAAG ACGTGCGCGT CTGGTACGAG CGCTGTTGCC GGATGCTGGC CGAGCGACTC 
GGGCAGCCGG TGCAGCCGGC CGTCACCGCC GAGCTGAAGA TCGACGGGCT GGCCATGGCG 
CTGACGTACG AAAACGGCGT GCTGACCGTC GGTGCTACGC GCGGTGACGG GATCGAAGGC 
GAAAACGTCA CGCAGAACGT GCGCACGATC CCGGCCATCC CGCTGCGCAT CCCCGTCGAT 
CCGGCGGTCG GACCACCGCC GACGCGGCTG GAAGTGCGGG GCGAGGTGTA CATGCGCAAG 
CGCGACTTCG AACGCCTGAA CGAACAGCTC CAGGCCCGGG GCGAGCGGCC CTTCGCCAAT 
CCGCGCAATG CGGCGGCCGG CAGCGTGCGC CAGCTCAACC CGCAGGTGAC CGCCTTGCGG 
CCGCTGAGCT TTTTTGCCTA CGGGATCGGG CCCGTCGAAG GCGCCGAGGT GCCCGACAGC 
CAGTACGAGG TGCTGCAATG GCTCGGGCGC CTGGGCTTCC CGGTCAACGA ACATGCCCGC 
CGCTTCGAGC ACCTGGACGA CGTGCTCGAA TACTGCCGCT ACTGGACCGA GCACCGCGAC 
GAGCTGGACT ACGAGATCGA CGGGGTCGTG CTGAAGATCG ACCACCGGCC CTGGCAGGCC 
CTGCTGGGTG CCATCTCCAA TGCGCCACGC TGGGCGGTGG CCTACAAATT TCCGGCCCGT 
GAGGCCATCA CGCGCCTGCT GGACATCATG GTCAGCGTGG GGCGCACCGG CGTGGTCAAA 
CCGGTGGCCG TGTTGGAGCC GGTCGAAGTC GGCGGTGTGA CGGTCTCGCA GGCCACGCTG 
CACAATGAAG ACTACGTGCG CAGCCGCGAC ATCCGGATCG GCGATCTGGT GGTGGTGATC 
CGGGCCGGCG ACGTGATTCC GCAGGTGGTG CGCCCCGTGG TCGAAGCGCG TACGGGCAAC 
GAGCGCCCCT GGCGCATGCC CGAGCGGTGT CCGTCGTGCG GCAGCCAGCT GGTGCGGCTG 
CCCGGTGAGG CCGACTATTA CTGTGTGGCG TCCGACTGCC CGGCGCAGTT CGTGCGGCTG 
CTGGAGCATT TCGCCGGCCG CGACGCCATG GACATCGAAG GCATGGGCAG CCAGGTGGCC 
CGGCAGCTGG CCGAGTCGGG TCTGGTGCGA CGGCTTTCGG ACCTGTACCG GCTGAAGCTG 
GAAGACCTGC TGAAGCTCGA AGGCTTTGCC GAGACGCGCG CGCGCAACCT GCTCCGGGCC 
ATCGAAGCCT CGAAGCAGCG GCCGCTGAGC CGGCTGCTCT TCGGCCTGGG CATCCGGCAC 
GTGGGCAAGA CGACCGCCGA GTTGCTCGTG CAGCGCTTCG CGTCGATCGA CGAGCTGGCC 
GCGGCTACGA TCGACGAACT GGCCGCCCTT GAAGGCGTGG GACCGATCAC GGCCGAAAGC 
ATTGCGAACT GGTTCCGTGT CGAAGACAAC CGGCGCCTGA TCGAAGAGCT GAAGGAACTG 
GGTGTCAACA CGCAGCGGTT GCCCGAAGAG GCACCGGCGG CCGAAAGTCC GGTGCGCGGC 
AAGACGTTCG TGCTGACGGG CGCTTTGCCC CATCTCACGC GCAAGGAGGC CGAGGAACTG 
ATCAAGCGGG CCGGCGGTCG CGTGGCCAGC AGCGTCAGCC GCAACACGGA CTACGTCGTC 
GTGGGCGAAA ACCCTGGCAG CAAGTACGAC CGTGCCCGCC AGCTCGGCAT CCCGATGCTC 
GACGAAGACG GCCTGCTGCG GCTGCTGGGG ATGAAATAA 

 

Protein sequence

METHTAPQTA EARLLEATHT LLQTVRQRDL EAIDRKEAEA LAARLREVLN QHAYRYYVLD 
NPLIPDADYD LLMQALRKLE ARFPELVTPD SPTQRVGGPP LGRFEKVRHP EPLLSLNNAF 
GEEDVRVWYE RCCRMLAERL GQPVQPAVTA ELKIDGLAMA LTYENGVLTV GATRGDGIEG 
ENVTQNVRTI PAIPLRIPVD PAVGPPPTRL EVRGEVYMRK RDFERLNEQL QARGERPFAN 
PRNAAAGSVR QLNPQVTALR PLSFFAYGIG PVEGAEVPDS QYEVLQWLGR LGFPVNEHAR 
RFEHLDDVLE YCRYWTEHRD ELDYEIDGVV LKIDHRPWQA LLGAISNAPR WAVAYKFPAR 
EAITRLLDIM VSVGRTGVVK PVAVLEPVEV GGVTVSQATL HNEDYVRSRD IRIGDLVVVI 
RAGDVIPQVV RPVVEARTGN ERPWRMPERC PSCGSQLVRL PGEADYYCVA SDCPAQFVRL 
LEHFAGRDAM DIEGMGSQVA RQLAESGLVR RLSDLYRLKL EDLLKLEGFA ETRARNLLRA 
IEASKQRPLS RLLFGLGIRH VGKTTAELLV QRFASIDELA AATIDELAAL EGVGPITAES 
IANWFRVEDN RRLIEELKEL GVNTQRLPEE APAAESPVRG KTFVLTGALP HLTRKEAEEL 
IKRAGGRVAS SVSRNTDYVV VGENPGSKYD RARQLGIPML DEDGLLRLLG MK