Gene Rmar_1081 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRmar_1081 
Symbol 
ID8567722 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodothermus marinus DSM 4252 
KingdomBacteria 
Replicon accessionNC_013501 
Strand
Start bp1249172 
End bp1251526 
Gene Length2355 bp 
Protein Length784 aa 
Translation table11 
GC content64% 
IMG OID 
Productglycoside hydrolase family 3 domain protein 
Protein accessionYP_003290361 
Protein GI268316642 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.000550104 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCTTTTGC TGCATCTGAA AGCTGCAGCG CAGGAGCGAC CGGCGTATCT GGACCCGACG 
CTTCCCATCG AAGTGCGCGT CGAGGACCTG CTTGGCCGCA TGACGCTCGA AGAAAAAGTC
GCCCAGATGC TGAGCATGTG GCAGACGAAG CGGTTGATCG TCGACGAGCA GAATCGCTTC
GATCCGAGCC GGGCGCCGGA ATGGTTCAAA CTGGGCATTG GCCGCATCGA GCGGCCGAGC
GAGTATTTCC AGACGGCGCG CGAGGCGGCC GCTTTCACCA ACGCCATCCA GCGCTGGGTC
AGAGAAAACA CACGACTGGG CATCCCCGTG CTTTTCCACG AGGAAGCCCT CCACGGCATT
CAGGCCTATG AGGCGACCAG TTATCCGCAG GCGATTGCGT TGGCGAGCAC GTGGAATCCG
GCGCTGGTGG AGCGGGTCTA CGGGCGGATT GCGCGGGAGG TGCGGGCGCG CGGGGTGCAT
CAGGTGCTGG CGCCGGTGGT GGACGTGGGT CGGGAGCCGC GCTGGGGTCG AATCGAGGAG
ACCTTTGGGG AGGATCCGTA CCTGGTGGCG GAGATGGGGA AGGCGGCCGT GTGGGGGTTG
CAGGGCCGTC GGGTTCCGCC GGTGGGACCG GGTCATGTGA TTGCGACGCT GAAGCACATG
ACGGGTCATG GTCAGCCGGA GAGCGGGATC AACGTGGCGC CGGTGTTTTT CGGGGAGCGT
CATTTGCGGG AGGTGTTTTT GTATCCGTTT CGGGAGGCGG TGGAGAAGGC GCATGCGCTG
AGTGTGATGG CTTCGTACAA TGAGGTGGAC GGGATACCGT CGCATGTGAA CGCGTGGATG
TTGCGGGATG TGTTGCGGGG CGAGTGGGGC TTCCGCGGCG TCATCGTCTC CGACTGGTTT
GCGATTCGTC AGCTCATCAC GAAGCATCAT GTAGCAGCCG ACGAGGCCGA AGCAGCGCGG
CGGGCGCTGG CCGCCACGGT GGACATCGAA CTCCCGGACT ACGATGTGTA CCCGGTATTG
CTGGAGCAGG TAAAAAAGGG GTTGATTCCG GAGTCGGCGA TAGACGAGGC GGTTCGTCGG
TTGTTGTGGG CGAAGTTTGC GGTGGGATTG TTTGACGGGG AGCCGTATGT GGACGAGGCG
GAGGCTTCGC GGGTGAACGC CTCGGAGGAG GATCGGGCGC TGGCGTTGGA GGCGGCGCGC
GAGGCGATCA TTTTGTTGAA GAACGACGGG TTGTTGCCGT TGGAGGCGGG TCGGTTGGAT
CGGGTGGCGG TGATTGGGCC GCATGCGGGG GAGGTGTTGC TGGGGGGATA TTCGGGGCGT
CCGCGTTACA CGGTGAGCAT ACTGGAGGGG TTGCGTGAGC GGTTGCGTGG GGAGGCGGAG
GTGTTGTATG CGGAGGGGGT TCGGATCACG GAAGACTCGG TCTTCACCGA CGAACCCCAG
CCGCACCTCG GAGGCGAGCG CGCCTATCCG CGCTGGGTGG CCGACACGGT GGTCTGGACC
GATCCGGAAT CCAACCGCCG ACGCATCGAG GAGGCGGTCG CGCTGGCCCG TCGGAGTGAT
GTGGCGATTC TGGTGGTTGG CGGCAACGAG CAGACTTCGC GTGAGGCCTG GGCGGTGAAC
CATCTTGGAG ATCGTTTGTC GTTGCGGTTG CCGGGTCAGC AGGAGGAGTT GGTGAAGGCG
GTGTTGGCGA CGGGAGTGCC GGTGGTGCTG GTGGTGATTG GCGGGCAGCC GTACGTGATC
ACGGAGTTAG TGGACCGGGT GGGGGCGATC GTGTGGGGCT GGTATCTGGG TCAGGAGACG
GGTCGTGCGG TGGCGGAGGT GTTGCTGGGG GATTACAATC CGGCGGGCCG TTTGCCGATC
ACGATACCGC GTCACGAGGG GCAGCTTCCG GCCTATTACA GTCACAAGCC GAGCAAGGAG
TTGGACTACG TGGACGGTAC GAGTCGGCCG CTTTTCCCGT TCGGGTATGG TTTGTCGTAC
ACGCGTTTTG CGTATCGGAG TGTTCGGTTG GAGCCGGATC GGGTGGGGGG ATGTGGAGTG
GTTCGGGTGC TGGTGGAGTT GGAGAACGTG GGGGATCGTG CCGGGGATGA GGTGGTGCAG
GTGTATGTTC GGGATCGGGT GAGCAGTGTG GCGCGACCGG TGAAGGAGTT GAAGGGATTT
CGTCGGGTGC ATTTGGGGCC GGGGGAGCGG AAGGTAGTGG AGATTGAGCT GGGGCCGGAG
GCGTTTGCGT TTTACGGCTT GGAGATGGAG CGGGTGGTGG AGGCGGGGTG GTTTGATGTG
CTGGTGGGGG GTAATTCGGA GGAGTTGATC AGCGTGCCCC TGGAAATCAC CGAAGACTGC
AATCTGGGGC CCTGA
 
Protein sequence
MLLLHLKAAA QERPAYLDPT LPIEVRVEDL LGRMTLEEKV AQMLSMWQTK RLIVDEQNRF 
DPSRAPEWFK LGIGRIERPS EYFQTAREAA AFTNAIQRWV RENTRLGIPV LFHEEALHGI
QAYEATSYPQ AIALASTWNP ALVERVYGRI AREVRARGVH QVLAPVVDVG REPRWGRIEE
TFGEDPYLVA EMGKAAVWGL QGRRVPPVGP GHVIATLKHM TGHGQPESGI NVAPVFFGER
HLREVFLYPF REAVEKAHAL SVMASYNEVD GIPSHVNAWM LRDVLRGEWG FRGVIVSDWF
AIRQLITKHH VAADEAEAAR RALAATVDIE LPDYDVYPVL LEQVKKGLIP ESAIDEAVRR
LLWAKFAVGL FDGEPYVDEA EASRVNASEE DRALALEAAR EAIILLKNDG LLPLEAGRLD
RVAVIGPHAG EVLLGGYSGR PRYTVSILEG LRERLRGEAE VLYAEGVRIT EDSVFTDEPQ
PHLGGERAYP RWVADTVVWT DPESNRRRIE EAVALARRSD VAILVVGGNE QTSREAWAVN
HLGDRLSLRL PGQQEELVKA VLATGVPVVL VVIGGQPYVI TELVDRVGAI VWGWYLGQET
GRAVAEVLLG DYNPAGRLPI TIPRHEGQLP AYYSHKPSKE LDYVDGTSRP LFPFGYGLSY
TRFAYRSVRL EPDRVGGCGV VRVLVELENV GDRAGDEVVQ VYVRDRVSSV ARPVKELKGF
RRVHLGPGER KVVEIELGPE AFAFYGLEME RVVEAGWFDV LVGGNSEELI SVPLEITEDC
NLGP