| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rmar_0536 |
|---|
| Symbol | |
|---|
| ID | 8567170 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodothermus marinus DSM 4252 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013501 |
|---|
| Strand | + |
|---|
| Start bp | 608068 |
|---|
| End bp | 610332 |
|---|
| Gene Length | 2265 bp |
|---|
| Protein Length | 754 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | |
|---|
| Product | glycoside hydrolase family 3 domain protein |
|---|
| Protein accession | YP_003289825 |
|---|
| Protein GI | 268316106 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 3 |
|---|
| Plasmid unclonability p-value | 0.0012986 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCGGACGT TGCGACTGCT TACCCTGAGC CTGCTCTGGA GCGGCTGGTT GCTTCCCGCC
ATAGCGCAGG TGGATCGGGC CCGCGAGGAC TCGCTCATCG AGGCGCTGCT GGCTCGCATG
ACGCTTGAAG AAAAGCTCGG CCAGCTCACG CTCTACAACG GGGGCATGGC CGAAACCGGC
CCGGTCGTGC GCGAGGGCGA GCCCGACGCC ATACGTCGCG GCCGCGTGGG CGCCGTGATG
AATTTCTTCG GGGCCGAGGC CGTCTGCGCC ATGCAGCGCC AGGCCGTCGA GGAAAGTCGG
CTGGGCATTC CGCTGCTGTT TGCGCTGGAC GTGATCCATG GTTTTCGGAC GATTTTTCCG
GTGCCGCTGG CCGAGGCGGC CACGTTCGAC CCGGCGCTGG TCGAGCAGGC GGCGCGTGTG
GCGGCCGGGG AGGCTTCGGC GGTGGGGCTC AACTGGACGT TTGCGCCGAT GGTCGACATT
GCGCGCGATG CCCGCTGGGG TCGGATCGTC GAGGGTAGCG GTGAGGATCC GTATCTGGGC
GCGGTGATGG CGGCGGCGCG CGTGCGGGGT TTTCAGGGGC GTGATCTTCG GGATCCGACC
ACGATTCTGG CCACGGCGAA GCACTTTGCG GCCTACGGGG CGGCCGAGGC CGGGCGCGAC
TACAACACGG TGGACGTTTC GGAGCGGACG CTTCGGGAGG TGTATCTGCC GCCGTTCGAG
GCGGCGGTGC GCGCCGGGGC GCTGTCGATC ATGTCGGCCT TCAACGAGAT CGGGGGCGTG
CCGGCCACGG CCGATCGCTG GCTGCTGACC GACGTGCTCC GCCACGAATG GGGCTTCGAA
GGACTGGTGG TGAGTGATTA CACCTCGGTC TGGGAGCTGC TTTTCCACGG GATTGCGGCC
GACAGTGCCG AGGTGGGGCG CAAGGCGCTG GAGGCGGGGG TGGACATGGA CATGGTCAGC
GGGATTTATG TGCGGAAGCT GGCCGAGGAG GTGCGTGCCG GACGGCTTTC GGAGGCGGTG
GTGGACGAGG CGGTGCGGCG CGTGCTGCGC GTGAAGTATC GGCTGGGGTT GTTCGAGGAT
CCCTACCGCT ACTGTCGGGA TGCCAGCCGC GAGCAGGTGT TGCTGTCGCC GGCGCACCGG
CGGCTGGCGC GGGAGGTGGC GCGTAAGGCG ATCGTGTTGC TGAAGAACGA GGGAGAGCTG
TTGCCGCTGG CGGACACGTT GCAGCGGGTG GCGGTCATCG GGGCGCTGGC CAACGATTCG
GCGAGTGTGC TGGGGCCGTG GGCGGCGGCG GGTCGTCCGG AGGATGCCGT GACGATTCTG
GAGGGGATCC GGGCGGCGCT TCCCGGAGCG ACGGTGCGCT ACGCGCCGGG CTATGCGGAG
GTGCCTTCAG GGAGTTTTCA GGAGATGGTG GCGGCGGCGT TGAGCCCGGA CACGAGCGGT
TTTGCCGAGG CGGAGGCGGT GGCGCGCTGG GCGGAGGTGG TGATTCTGGT GCTGGGGGAG
CACCGGGAGT TGAGCGGGGA GGCGGCCAGT CGGGCGTCGG TGGAGCTTCC GGGGGTGCAG
CTGGCGCTGG CGTGGCGCCT GCTGGCGCTG GGTCGGCCGG TGGTGGTGGT GTTGATGAAC
GGGCGGCCGC TGGCAATTCC GGAGCTGGCC GCTTCGGCAC CGGCGATCGT GGAGGCGTGG
TTTCTGGGGA CGGAGATGGG GCACGCGGTG GCGGACGTGC TGCTGGGGAA GGCGAGTCCG
GGGGGGCGGC TTCCGGTGTC GTTTCCGCGG GCGACGGGTC AGGAGCCGCT CTATTACAAT
CATAAACCGA CGGGGCGGCC GCCGCGGGCC GAGGAGAAGT ACACGTCGAA GTACGTGGAC
GTGCCCTGGA CGCCGCTGTA CCCGTTTGGT TACGGGTTGA CCTACACGAC GTTTGCGTAC
GACAGTCTTC GGTTGAGCCG GAGGCGGCTG GGGTTGGACG ACACGCTGGA GGTGGTGGTG
TCGGTGACGA ATACGGGTCG GCGTCGGGGG GAGGAGGTGG TGCAGCTATA CGTGCGGGAC
GAGGTGGCGT CGGTGACGCG CCCGGTGAAG GAGCTGAAAG GCTTTGCGCG GGTGGAGCTG
GCGCCGGGCG AGACGAAGGC GGTGCAGTTT CGGTTGCCGG TGCGTGCGCT TCGGTTCTGG
GGTTTGGAAG GGGGCTGGGT GGTGGAGCCG GGCTGGTTCA CGCTGTGGGT GGGGCCCTCG
TCGGCCGAAG GGCTGCAGGC ACGGTTCGAG GTGGTCAGTC CGTAG
|
|---|
| Protein sequence | MRTLRLLTLS LLWSGWLLPA IAQVDRARED SLIEALLARM TLEEKLGQLT LYNGGMAETG
PVVREGEPDA IRRGRVGAVM NFFGAEAVCA MQRQAVEESR LGIPLLFALD VIHGFRTIFP
VPLAEAATFD PALVEQAARV AAGEASAVGL NWTFAPMVDI ARDARWGRIV EGSGEDPYLG
AVMAAARVRG FQGRDLRDPT TILATAKHFA AYGAAEAGRD YNTVDVSERT LREVYLPPFE
AAVRAGALSI MSAFNEIGGV PATADRWLLT DVLRHEWGFE GLVVSDYTSV WELLFHGIAA
DSAEVGRKAL EAGVDMDMVS GIYVRKLAEE VRAGRLSEAV VDEAVRRVLR VKYRLGLFED
PYRYCRDASR EQVLLSPAHR RLAREVARKA IVLLKNEGEL LPLADTLQRV AVIGALANDS
ASVLGPWAAA GRPEDAVTIL EGIRAALPGA TVRYAPGYAE VPSGSFQEMV AAALSPDTSG
FAEAEAVARW AEVVILVLGE HRELSGEAAS RASVELPGVQ LALAWRLLAL GRPVVVVLMN
GRPLAIPELA ASAPAIVEAW FLGTEMGHAV ADVLLGKASP GGRLPVSFPR ATGQEPLYYN
HKPTGRPPRA EEKYTSKYVD VPWTPLYPFG YGLTYTTFAY DSLRLSRRRL GLDDTLEVVV
SVTNTGRRRG EEVVQLYVRD EVASVTRPVK ELKGFARVEL APGETKAVQF RLPVRALRFW
GLEGGWVVEP GWFTLWVGPS SAEGLQARFE VVSP
|
|---|
| |