Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rmar_0285 |
Symbol | |
ID | 8566915 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodothermus marinus DSM 4252 |
Kingdom | Bacteria |
Replicon accession | NC_013501 |
Strand | + |
Start bp | 309925 |
End bp | 312897 |
Gene Length | 2973 bp |
Protein Length | 990 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | |
Product | alpha amylase catalytic region |
Protein accession | YP_003289579 |
Protein GI | 268315860 |
COG category | |
COG ID | |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGCGCAGGT TCTGGCTGTT TGCGCTGCTG TTCTGGTATG GCGCGACCGT CGCTTCCGGA CAGGTGGTCT GGACCGATCC CGCTGTGGTG CGCGTGGATC GGCCCGTCAC GATCTACTTC AATGCAAAGG AAGGCACGGG CGGGCTGGCC GGCTACACGG GCGACGTCTA CGCGCACACG GGCGTCATCA CGAATGAAAG CCGCACCGAC ACCGACTGGC GCTATGTGAA AGCGGACTGG GGCGAAAACC GTGCGGACAT CCGCATGGAG CGCATCGGCG AAGACCTCTA TCGCCTGCAC ATCCCCGACA TTCGCGCCTA CTATCAGGAT TACTCGGGCA CGCCGCCGCC CGGGGCGCCG CCGTGGGACA ACATCTACGA CGAGCAGATC CTCAAGCTGG CTTTCGTCTT TCGGAATGCC GACGGCTCGC GTGAGGGCAA AGACGTGGGT GGCCGCGACA TTTTCGTGGA CGTGGCGCCG CCCGGTCTGG CCGTCACGTT TGCCGCGCCG AGCGTGACGC CGCTGCGCCC GCTCATCGCA CCGCGCGACA CCAGCGTGGA GGTCGTCGCC GTGGCCGATC CGGGGGCCGG CGCCACGCTG ACGGCCTTCC GCCTGCTGGT CGAAGGCGTC GAAGTAGCGC AGACCACCGA CGACACGCTT CGCTACACGC TGACGCTGAA CGTGCCCGGT CGTTTCGACG TGCTGGCCAT CGCCGAAAAC TCGCTGGGCG AGGCCGATAC GGCCGCCTTC TACGCCGTCC GCAACCCTGC CGTCGAGGAC CGGCCGCGTC CGCCCGGCAT CGAAGACGGG ATCAACTACG ACCCGAACGA TCCCACACGG GTCACGCTCT CGCTTTACGC GCCGGGCAAG TCGTTCGTCT ACGTGATCGG CGACTTCACG AACTGGGAGG TGGACCCGGC CTACTTCATG TACCGCGACG CACCGCGGCC CGACAGTGTC CACTGGTGGA TCACCATCGA AGGACTCACG CCGGGGCAGG AGTACGCTTT CCAGTACTTT ATCGACGGCG AGTTGCGGCT GGCCGATCTG TTCGCGCACA AGGTGCTCGA TCCCTGGCAC GATCCGTTCA TCCCGAGCAG CACGTACCCG AACCTGAAGC CCTACCCGAC CGGCAAGACC GAAGGGATCG TGGCCGTGCT GCAACCCGGC GCGCCACAGT ATCAATGGCA GGTGACCGAC TTCGAGCGGC CGCCCGCGCA CGAGCTGGTC ATCTACGAGC TGCTCCTTCG CGACTTCGTG GCGAAGCACG ACTACGCCAC GCTTATCGAC ACGCTCGACT ACCTGGAGCG CCTGGGCGTC AACGCCATCG AACTGATGCC CGTGGCCGAG TTCGATGGCA ACATCAGCTG GGGCTACAAC CCGGCCTTTC ATCTGGCGCC CGACAAGTAC TACGGTCCGG CCGACGACCT CAAGCGCTTC GTGGACGAGT GTCACCGCCG CGGCATTGCC GTCATCCTTG ATGTCGTCTA CAACCATGCC ACGGGCAATT CGCCGCTGGT GCAGCTCTAC GGCCCCACCG CAGACAATCC TTTCATCAAC ATCCCCGCCC GCCATCCCTT CAACGTATTC TACGACCTGA ACCACGAGCA CCCCTACATC CAGTACTGGC TTGACCGGGC CAACCGTTAC TGGCTGGAGG AATTCCGCGT GGACGGCTTC CGCTTCGACC TTTCGAAAGG CTTTACGCAG AAATACACCG ACAACGACGT CGGCGCCTGG AGCGCCTACG ACGCCTCGCG CATCCGGCTG CTCAAGCGCA TGGCCGATGC GATCTGGGCG GTCGATTCCA CGGCCTACAT CATTCTGGAG CATTTTGCGG ACAATCAGGA AGAAAAAGAA CTGGCCGCCT ACGGGCAGGA TCGTGGACGC GCCGGGATGC TGCTCTGGCA TAACCTGAAC CGCGCCTTCA GCCAGAGCGT GATGGGGTAC CTGAACGACC CGAACTTTTC GTCCGATCTG ACCACGATCT ATTACAAAAA CCGGGGTTTC CCGACGCCGA ACCTGATCGC CTACATGGAA AGCCACGACG AACAGTGGCT TATGTACCGG ATGCGGGCCT ACGGGGCGCG GCAGGGATCC TACGACGTGC GGAGCCTGCC CGTGGCGCTG GATCGGATGA AGCTGGCCGG GGCGTTTTTC TTCACAGTGC CCGGACCGAA AATGATCTGG CAGTTCGGCG AGCTGGGTTA TGGCTACGGC GAGCGCGGCG AGCAGTGCCT GGAAGGCGCG GGCGATAGCT GTCCGTCCAT TGCGCCCGGC CGTATCGATC CGAAGCCCAT CCGCTGGGAC TATCGCAACG ATCCGCTCCG GATGAAGCTG TACAAGACCT GGGCCGAGCT GCTCAGGCTT CGGCGCGAAC ATGCCGTGTT CCGCAGCCCG GAAACGCAGG TGCGCATGCG ATTGCAGCAC GGCGTGCCCG GTCGGTGGCT CTCGCTCACG CATCCGGAGC TGAGCGTTGT GGTGGTGGGC AACTTCGGCC TGGAGCCGCT GGTGGTCACG CCCACGTTCC CGCAGACGGG CACCTGGTAC GACTACTTCA ACGGCGACTC GCTGGTGGTC GACGATCCGA ATACAGGCAT CGAACTGCTG CCCGGCGAGT TCCGGCTCTA CACAAACCGT TATGTGGGGC AGGCCGAGCC AGGCCTGATC ACCGTGGGCG TCGCTTCGGG CGATGCGTCG ACGCGGCCGG AACGCGTGCG GCTGGAGACG CCATTTCCGA ACCCGTTCCG CACGCAGGTT ACGCTCCGCT ATGCGCTGCC CGAGCCGATG CGGGTAAAGC TGGCCGTTTA CGATCTGCTG GGCCGTCGGA TTGCCACGCT GGCAGACGGC CTGCAGGCGG CCGGACGACA CACGATCACC TGGATGCCTG AGAAGCTGGC GGCCGGGCTG TATCTGGTGC GGCTCGAAGC CGGCGGCCAC ACGGAAACCC GCCCGGTGCT GTTTGCTCCC TGA
|
Protein sequence | MRRFWLFALL FWYGATVASG QVVWTDPAVV RVDRPVTIYF NAKEGTGGLA GYTGDVYAHT GVITNESRTD TDWRYVKADW GENRADIRME RIGEDLYRLH IPDIRAYYQD YSGTPPPGAP PWDNIYDEQI LKLAFVFRNA DGSREGKDVG GRDIFVDVAP PGLAVTFAAP SVTPLRPLIA PRDTSVEVVA VADPGAGATL TAFRLLVEGV EVAQTTDDTL RYTLTLNVPG RFDVLAIAEN SLGEADTAAF YAVRNPAVED RPRPPGIEDG INYDPNDPTR VTLSLYAPGK SFVYVIGDFT NWEVDPAYFM YRDAPRPDSV HWWITIEGLT PGQEYAFQYF IDGELRLADL FAHKVLDPWH DPFIPSSTYP NLKPYPTGKT EGIVAVLQPG APQYQWQVTD FERPPAHELV IYELLLRDFV AKHDYATLID TLDYLERLGV NAIELMPVAE FDGNISWGYN PAFHLAPDKY YGPADDLKRF VDECHRRGIA VILDVVYNHA TGNSPLVQLY GPTADNPFIN IPARHPFNVF YDLNHEHPYI QYWLDRANRY WLEEFRVDGF RFDLSKGFTQ KYTDNDVGAW SAYDASRIRL LKRMADAIWA VDSTAYIILE HFADNQEEKE LAAYGQDRGR AGMLLWHNLN RAFSQSVMGY LNDPNFSSDL TTIYYKNRGF PTPNLIAYME SHDEQWLMYR MRAYGARQGS YDVRSLPVAL DRMKLAGAFF FTVPGPKMIW QFGELGYGYG ERGEQCLEGA GDSCPSIAPG RIDPKPIRWD YRNDPLRMKL YKTWAELLRL RREHAVFRSP ETQVRMRLQH GVPGRWLSLT HPELSVVVVG NFGLEPLVVT PTFPQTGTWY DYFNGDSLVV DDPNTGIELL PGEFRLYTNR YVGQAEPGLI TVGVASGDAS TRPERVRLET PFPNPFRTQV TLRYALPEPM RVKLAVYDLL GRRIATLADG LQAAGRHTIT WMPEKLAAGL YLVRLEAGGH TETRPVLFAP
|
| |