Gene Rmar_0285 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRmar_0285 
Symbol 
ID8566915 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodothermus marinus DSM 4252 
KingdomBacteria 
Replicon accessionNC_013501 
Strand
Start bp309925 
End bp312897 
Gene Length2973 bp 
Protein Length990 aa 
Translation table11 
GC content64% 
IMG OID 
Productalpha amylase catalytic region 
Protein accessionYP_003289579 
Protein GI268315860 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCGCAGGT TCTGGCTGTT TGCGCTGCTG TTCTGGTATG GCGCGACCGT CGCTTCCGGA 
CAGGTGGTCT GGACCGATCC CGCTGTGGTG CGCGTGGATC GGCCCGTCAC GATCTACTTC
AATGCAAAGG AAGGCACGGG CGGGCTGGCC GGCTACACGG GCGACGTCTA CGCGCACACG
GGCGTCATCA CGAATGAAAG CCGCACCGAC ACCGACTGGC GCTATGTGAA AGCGGACTGG
GGCGAAAACC GTGCGGACAT CCGCATGGAG CGCATCGGCG AAGACCTCTA TCGCCTGCAC
ATCCCCGACA TTCGCGCCTA CTATCAGGAT TACTCGGGCA CGCCGCCGCC CGGGGCGCCG
CCGTGGGACA ACATCTACGA CGAGCAGATC CTCAAGCTGG CTTTCGTCTT TCGGAATGCC
GACGGCTCGC GTGAGGGCAA AGACGTGGGT GGCCGCGACA TTTTCGTGGA CGTGGCGCCG
CCCGGTCTGG CCGTCACGTT TGCCGCGCCG AGCGTGACGC CGCTGCGCCC GCTCATCGCA
CCGCGCGACA CCAGCGTGGA GGTCGTCGCC GTGGCCGATC CGGGGGCCGG CGCCACGCTG
ACGGCCTTCC GCCTGCTGGT CGAAGGCGTC GAAGTAGCGC AGACCACCGA CGACACGCTT
CGCTACACGC TGACGCTGAA CGTGCCCGGT CGTTTCGACG TGCTGGCCAT CGCCGAAAAC
TCGCTGGGCG AGGCCGATAC GGCCGCCTTC TACGCCGTCC GCAACCCTGC CGTCGAGGAC
CGGCCGCGTC CGCCCGGCAT CGAAGACGGG ATCAACTACG ACCCGAACGA TCCCACACGG
GTCACGCTCT CGCTTTACGC GCCGGGCAAG TCGTTCGTCT ACGTGATCGG CGACTTCACG
AACTGGGAGG TGGACCCGGC CTACTTCATG TACCGCGACG CACCGCGGCC CGACAGTGTC
CACTGGTGGA TCACCATCGA AGGACTCACG CCGGGGCAGG AGTACGCTTT CCAGTACTTT
ATCGACGGCG AGTTGCGGCT GGCCGATCTG TTCGCGCACA AGGTGCTCGA TCCCTGGCAC
GATCCGTTCA TCCCGAGCAG CACGTACCCG AACCTGAAGC CCTACCCGAC CGGCAAGACC
GAAGGGATCG TGGCCGTGCT GCAACCCGGC GCGCCACAGT ATCAATGGCA GGTGACCGAC
TTCGAGCGGC CGCCCGCGCA CGAGCTGGTC ATCTACGAGC TGCTCCTTCG CGACTTCGTG
GCGAAGCACG ACTACGCCAC GCTTATCGAC ACGCTCGACT ACCTGGAGCG CCTGGGCGTC
AACGCCATCG AACTGATGCC CGTGGCCGAG TTCGATGGCA ACATCAGCTG GGGCTACAAC
CCGGCCTTTC ATCTGGCGCC CGACAAGTAC TACGGTCCGG CCGACGACCT CAAGCGCTTC
GTGGACGAGT GTCACCGCCG CGGCATTGCC GTCATCCTTG ATGTCGTCTA CAACCATGCC
ACGGGCAATT CGCCGCTGGT GCAGCTCTAC GGCCCCACCG CAGACAATCC TTTCATCAAC
ATCCCCGCCC GCCATCCCTT CAACGTATTC TACGACCTGA ACCACGAGCA CCCCTACATC
CAGTACTGGC TTGACCGGGC CAACCGTTAC TGGCTGGAGG AATTCCGCGT GGACGGCTTC
CGCTTCGACC TTTCGAAAGG CTTTACGCAG AAATACACCG ACAACGACGT CGGCGCCTGG
AGCGCCTACG ACGCCTCGCG CATCCGGCTG CTCAAGCGCA TGGCCGATGC GATCTGGGCG
GTCGATTCCA CGGCCTACAT CATTCTGGAG CATTTTGCGG ACAATCAGGA AGAAAAAGAA
CTGGCCGCCT ACGGGCAGGA TCGTGGACGC GCCGGGATGC TGCTCTGGCA TAACCTGAAC
CGCGCCTTCA GCCAGAGCGT GATGGGGTAC CTGAACGACC CGAACTTTTC GTCCGATCTG
ACCACGATCT ATTACAAAAA CCGGGGTTTC CCGACGCCGA ACCTGATCGC CTACATGGAA
AGCCACGACG AACAGTGGCT TATGTACCGG ATGCGGGCCT ACGGGGCGCG GCAGGGATCC
TACGACGTGC GGAGCCTGCC CGTGGCGCTG GATCGGATGA AGCTGGCCGG GGCGTTTTTC
TTCACAGTGC CCGGACCGAA AATGATCTGG CAGTTCGGCG AGCTGGGTTA TGGCTACGGC
GAGCGCGGCG AGCAGTGCCT GGAAGGCGCG GGCGATAGCT GTCCGTCCAT TGCGCCCGGC
CGTATCGATC CGAAGCCCAT CCGCTGGGAC TATCGCAACG ATCCGCTCCG GATGAAGCTG
TACAAGACCT GGGCCGAGCT GCTCAGGCTT CGGCGCGAAC ATGCCGTGTT CCGCAGCCCG
GAAACGCAGG TGCGCATGCG ATTGCAGCAC GGCGTGCCCG GTCGGTGGCT CTCGCTCACG
CATCCGGAGC TGAGCGTTGT GGTGGTGGGC AACTTCGGCC TGGAGCCGCT GGTGGTCACG
CCCACGTTCC CGCAGACGGG CACCTGGTAC GACTACTTCA ACGGCGACTC GCTGGTGGTC
GACGATCCGA ATACAGGCAT CGAACTGCTG CCCGGCGAGT TCCGGCTCTA CACAAACCGT
TATGTGGGGC AGGCCGAGCC AGGCCTGATC ACCGTGGGCG TCGCTTCGGG CGATGCGTCG
ACGCGGCCGG AACGCGTGCG GCTGGAGACG CCATTTCCGA ACCCGTTCCG CACGCAGGTT
ACGCTCCGCT ATGCGCTGCC CGAGCCGATG CGGGTAAAGC TGGCCGTTTA CGATCTGCTG
GGCCGTCGGA TTGCCACGCT GGCAGACGGC CTGCAGGCGG CCGGACGACA CACGATCACC
TGGATGCCTG AGAAGCTGGC GGCCGGGCTG TATCTGGTGC GGCTCGAAGC CGGCGGCCAC
ACGGAAACCC GCCCGGTGCT GTTTGCTCCC TGA
 
Protein sequence
MRRFWLFALL FWYGATVASG QVVWTDPAVV RVDRPVTIYF NAKEGTGGLA GYTGDVYAHT 
GVITNESRTD TDWRYVKADW GENRADIRME RIGEDLYRLH IPDIRAYYQD YSGTPPPGAP
PWDNIYDEQI LKLAFVFRNA DGSREGKDVG GRDIFVDVAP PGLAVTFAAP SVTPLRPLIA
PRDTSVEVVA VADPGAGATL TAFRLLVEGV EVAQTTDDTL RYTLTLNVPG RFDVLAIAEN
SLGEADTAAF YAVRNPAVED RPRPPGIEDG INYDPNDPTR VTLSLYAPGK SFVYVIGDFT
NWEVDPAYFM YRDAPRPDSV HWWITIEGLT PGQEYAFQYF IDGELRLADL FAHKVLDPWH
DPFIPSSTYP NLKPYPTGKT EGIVAVLQPG APQYQWQVTD FERPPAHELV IYELLLRDFV
AKHDYATLID TLDYLERLGV NAIELMPVAE FDGNISWGYN PAFHLAPDKY YGPADDLKRF
VDECHRRGIA VILDVVYNHA TGNSPLVQLY GPTADNPFIN IPARHPFNVF YDLNHEHPYI
QYWLDRANRY WLEEFRVDGF RFDLSKGFTQ KYTDNDVGAW SAYDASRIRL LKRMADAIWA
VDSTAYIILE HFADNQEEKE LAAYGQDRGR AGMLLWHNLN RAFSQSVMGY LNDPNFSSDL
TTIYYKNRGF PTPNLIAYME SHDEQWLMYR MRAYGARQGS YDVRSLPVAL DRMKLAGAFF
FTVPGPKMIW QFGELGYGYG ERGEQCLEGA GDSCPSIAPG RIDPKPIRWD YRNDPLRMKL
YKTWAELLRL RREHAVFRSP ETQVRMRLQH GVPGRWLSLT HPELSVVVVG NFGLEPLVVT
PTFPQTGTWY DYFNGDSLVV DDPNTGIELL PGEFRLYTNR YVGQAEPGLI TVGVASGDAS
TRPERVRLET PFPNPFRTQV TLRYALPEPM RVKLAVYDLL GRRIATLADG LQAAGRHTIT
WMPEKLAAGL YLVRLEAGGH TETRPVLFAP