| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rleg_4008 |
|---|
| Symbol | |
|---|
| ID | 8014817 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhizobium leguminosarum bv. trifolii WSM1325 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012850 |
|---|
| Strand | + |
|---|
| Start bp | 4086157 |
|---|
| End bp | 4087155 |
|---|
| Gene Length | 999 bp |
|---|
| Protein Length | 332 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | 644826577 |
|---|
| Product | TRAP dicarboxylate transporter, DctP subunit |
|---|
| Protein accession | YP_002977788 |
|---|
| Protein GI | 241206692 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG1638] TRAP-type C4-dicarboxylate transport system, periplasmic component |
|---|
| TIGRFAM ID | [TIGR00787] tripartite ATP-independent periplasmic transporter solute receptor, DctP family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 28 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 21 |
|---|
| Fosmid unclonability p-value | 0.182946 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTTAGAAT TCAATATCAT GCGGGCTCAC GCCGGTCGCC TTTCCATGTC CACCATCGCC
GGCATCATGT TGCTTTGCAC CGGCCAAGCG AATGCCGAAA CTCTTCGGCT CGCCCACGCA
TCGAGCTCGA AGAGCCTCAT TCAGGAGGCT GTCGTCATGT TCGCCGACAA GCTCGCCGGC
GAAACCAAGG GCGGCCTTAC CGTCCAGATT TTTCCAGATG GTCAGTTGGG CGATGAGGGA
CCGATCGCCG ATGGTGTCGG CTCCGGCTCC ATCGATATCG GGTTAGGCGG CGTTGCCGAT
GCGATCGATC CGAAGCTCAA CGTCGTCACC TTGCCGTTCT TGTTTTCCGA TGCAAACGCA
GCGCACACCT TTCTCGACGG ACCAGTCGGG AAGAAGGTCT TCGACACGGG TGCCGACAAC
GGCTTCAAGA TGCTCGGCGC GCTTGATTCC GGTTTCCGCC AATTTGCAAC TGTCAGCAAA
TCAATCGCGA CGCCGGAGGA TATCAAGGGT CTGAAGCTGC GCACGCCGCC GAACCCCGTC
ATTCTCGCAA CCATCGAACA GCTGGGTGCC CTGCCGCAAT CGATTCCATT CGGGGAGGTC
TATACCTCGC TGCAATCGCA TGTGGTCGAC GGCGTGGAGC CGGAAATACG CGATTTCGCG
GATCAGAAAT GGTACGAAAG CGCGAAGTTC CTATCGGTCT CGAACTATAT CTGGACGCCG
AATTACTGGT TCATGAACAA GGAGCGCTTC GACGCTCTGA GCCCGGAAAA CCAGGCTGCG
GTGACCAAGG CAGTCGAAGA GACGACGATC TGGTACCGCG GAAAACTCGA CGAAGTCTAT
GCCCAGGTCA TTGAGGACCT CAAGTCGAAG GGCGTCACCG TAACGACGGT GGACACGACA
CCCTTCCGTG CGATGGTTGA TCCTGTCTAT GTGAAATTCG GGGCGGAATG GGGCGACGAT
CTGGTGTCGT CCGTGCGCTC GGCAGCAGCC GGAAAATAG
|
|---|
| Protein sequence | MLEFNIMRAH AGRLSMSTIA GIMLLCTGQA NAETLRLAHA SSSKSLIQEA VVMFADKLAG
ETKGGLTVQI FPDGQLGDEG PIADGVGSGS IDIGLGGVAD AIDPKLNVVT LPFLFSDANA
AHTFLDGPVG KKVFDTGADN GFKMLGALDS GFRQFATVSK SIATPEDIKG LKLRTPPNPV
ILATIEQLGA LPQSIPFGEV YTSLQSHVVD GVEPEIRDFA DQKWYESAKF LSVSNYIWTP
NYWFMNKERF DALSPENQAA VTKAVEETTI WYRGKLDEVY AQVIEDLKSK GVTVTTVDTT
PFRAMVDPVY VKFGAEWGDD LVSSVRSAAA GK
|
|---|
| |