Gene Rleg_3665 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRleg_3665 
Symbol 
ID8014511 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhizobium leguminosarum bv. trifolii WSM1325 
KingdomBacteria 
Replicon accessionNC_012850 
Strand
Start bp3711957 
End bp3712826 
Gene Length870 bp 
Protein Length289 aa 
Translation table11 
GC content60% 
IMG OID644826228 
ProductTPR repeat-containing protein 
Protein accessionYP_002977447 
Protein GI241206351 
COG category[N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG3063] Tfp pilus assembly protein PilF 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value0.00516372 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clones24 
Fosmid unclonability p-value0.53352 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCTGTCA ATACCTTTAA TCCGTCCCGC GCTCTGCGTT TGCAGAAAAC GGCATTCCTG 
CCCGCTCTGG CGCTGGCGGC AATGTTCGGC CTCGCCGGCT GTGAGACGAC CAATACCACG
GATGCCGTGA TCCGCATCGA CAAGGCGCAG GGCTCGGAAG AGAACATCGC GTCGCTGACG
GCGGTCATCA ACGCCAATCC GAGGGATCCC GAAGGTTACA ACGTCCGTGG TTCCGCCTAT
GGCCGCGCCG GCCAGTTCCG CCCGGCGCTG AACGATTTCA ACACGGCATT ACAGATCAAT
CCGCGGTTTT TCCAGGCTTA CGCCAACCGC GCTCTCGTTT ATCGCAACAT GGGCCAGCAG
GCCCAGGCGA TTTCCGATTA CAATGCCGCC CTGCAGATCA ATCCGAGCTA CGACGTCGCC
TATATCGGCC GCGGCAATGT CTATCGCATG GCCGGCCAGG ATGATCAGGC TTTCAACGAT
TTCGACAAGG CGATCCAACT CGGCACTACC GATGGCCGCG CCTATCACAA TCGTGGCCTG
ATCTATCAGA AGCGCAATCA GCAGGACAAG GCGATCGACG ATTTCTCGAA AGCGATCTCG
CTCGCCCCGA ATTCGGCCGA GCCCTATAAT GGCCGCGGCA TTTCCTATAT CGCGCTGAAC
GACGACGACA ACGCCTTTGC CGATTTCAAC CATGCGATCG AGCTTAACGG CAACATCGCC
GAATCCTGGG CCAACCAGGC GCTCGTCTAC GAACGCCGCG GCGACAAGGC GAAGGCTGCC
CGCTCCTATC GTCACGCGAT CGGCCTCGAT CCGAAGTACC AGCCGGCCCG TGACGGCCTT
GCTCGCGTCG GCGTCGCCCC AGCCGGCTAA
 
Protein sequence
MAVNTFNPSR ALRLQKTAFL PALALAAMFG LAGCETTNTT DAVIRIDKAQ GSEENIASLT 
AVINANPRDP EGYNVRGSAY GRAGQFRPAL NDFNTALQIN PRFFQAYANR ALVYRNMGQQ
AQAISDYNAA LQINPSYDVA YIGRGNVYRM AGQDDQAFND FDKAIQLGTT DGRAYHNRGL
IYQKRNQQDK AIDDFSKAIS LAPNSAEPYN GRGISYIALN DDDNAFADFN HAIELNGNIA
ESWANQALVY ERRGDKAKAA RSYRHAIGLD PKYQPARDGL ARVGVAPAG