| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rleg_2263 |
|---|
| Symbol | |
|---|
| ID | 8013266 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhizobium leguminosarum bv. trifolii WSM1325 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012850 |
|---|
| Strand | - |
|---|
| Start bp | 2268439 |
|---|
| End bp | 2269206 |
|---|
| Gene Length | 768 bp |
|---|
| Protein Length | 255 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 644824848 |
|---|
| Product | short chain dehydrogenase |
|---|
| Protein accession | YP_002976078 |
|---|
| Protein GI | 241204982 |
|---|
| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
|---|
| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.00829126 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 19 |
|---|
| Fosmid unclonability p-value | 0.0703688 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACACTTC TCAACGACAA GATCGCCATC ATCACCGGCG CAAGCTCAGG CATCGGCCGC
GCAGCGGCGA AACTCTTTGC ACGGCAAGGT GCCAAGCTCG TGGTCACCGG CCGGCGACAA
GACGCGCTCG ACGCCGTCAT CGCGGAAATT GAGGCGGAGG GTGGGCAGGC CGTCGCCATA
TCAGGCGATG TCAGGGACGA GGCGCTCCAG GAAAGGCTTG TCGAAACGGC AGTCTCGCGT
TTCGGCCGGC TCGACATCGC CTTCAACAAT GCCGGCATCA TCGGTGAGAT GGGGCCGGTC
GCCGGGCTGT CGGTGGAGGG CTGGCGCGAG ACGATCGAGA CCAATCTCAC CGCCGCCTTC
CTCGGCGCCA AACACCAGTC GGCGGCGATG GGGAAAGGCG GCGGATCGCT GATCTTCACC
TCGACCTTTG TCGGCCACAC CGTCGGCATG CCGGGCATGG CCGCCTATGC GGCGAGCAAG
GCGGGGCTGA TCGGCTTCGT GCAGGTGCTC GCCGCCGAAC TCGGAGCGCA AAAGATCCGC
GTCAACGCGC TGCTTCCCGG CGGCACCGAC ACGCCCGCCA GTATCACCAA CGCGCCTGAT
GCCACGCCGG AGGTGCTCGC CTTCGTGGAG GGGCTGCATG CGCTGAAACG CATGGCGCAA
CCCGAAGAGA TCGCCAATGC GGCGCTTTTC CTCGCCTCCG ACATGTCGAG CTTCGTGACC
GGCACGGCGA TGCTGGCAGA TGGTGGGGTT TCGATCAGCC GAACATAG
|
|---|
| Protein sequence | MTLLNDKIAI ITGASSGIGR AAAKLFARQG AKLVVTGRRQ DALDAVIAEI EAEGGQAVAI
SGDVRDEALQ ERLVETAVSR FGRLDIAFNN AGIIGEMGPV AGLSVEGWRE TIETNLTAAF
LGAKHQSAAM GKGGGSLIFT STFVGHTVGM PGMAAYAASK AGLIGFVQVL AAELGAQKIR
VNALLPGGTD TPASITNAPD ATPEVLAFVE GLHALKRMAQ PEEIANAALF LASDMSSFVT
GTAMLADGGV SISRT
|
|---|
| |