Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rleg_0410 |
Symbol | |
ID | 8011612 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhizobium leguminosarum bv. trifolii WSM1325 |
Kingdom | Bacteria |
Replicon accession | NC_012850 |
Strand | + |
Start bp | 423560 |
End bp | 424378 |
Gene Length | 819 bp |
Protein Length | 272 aa |
Translation table | 11 |
GC content | 62% |
IMG OID | 644823005 |
Product | binding-protein-dependent transport systems inner membrane component |
Protein accession | YP_002974260 |
Protein GI | 241203164 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG1177] ABC-type spermidine/putrescine transport system, permease component II |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 0.00439076 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | 7 |
Fosmid unclonability p-value | 0.00000318128 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGCTGAAAT GGACCCGTTT CAACATCGTC TCCGTCACGC TCGGCTTCGC TTTCCTCTAT CTGCCGATCG TGCTTCTCGT CATTTTCTCC TTCAACGAAT CCAAACTCGT GACCGTCTGG GGCGGCTTCT CGACGAAATG GTATGTCTCG TTGATGAGCA ATCAGGCCTT GCTCGACGCT GCGTGGGTGA CGCTGCGCGT CGGACTGCTG TCGGCAACGT TTGCAACCAT CCTCGGCACG ATGGCGGCGC TGACATTGGT GCGCTACACG CGCTTTCGCG GACGCATGCT GTTTTCGGGC ATGGTCTATG CGCCCCTCGT CATGCCGGAG GTCATCACCG GCCTGTCATT GCTGCTGCTC TTCGTCGCGA TCGGTCTCGA CCGCGGCTTC TGGACGATCA CGCTCGCGCA TACGACGTTG ACCATGTGCT TCGTCGCCGT CGTCGTCCAG TCGCGCCTGC TGAGTTTCGA TCATTCGATC GAGGAAGCGG CTCAGGATCT CGGCGCGCCG CCGGTGCGGA CTTTCTTCGA GATCACCCTG CCGATCATCG CGCCCGCCGT CGCCTCCGGC TGGATCCTGG CCTTCACCCT GTCGCTCGAC GATCTGGTGA TTGCAAGCTT CACGTCGGGG CCTGGCGCCA CCACGCTGCC GATGAGGATC TACAGCCAGG TCCGCCTCGG CGTAACGCCC GAGATCAATG CGGTGTGCAC GATCCTGATC GGCATCGTCG CCCTCGGCGT CATCTGCGCC TCGATCATCA CCAAGCGCCG CGAAACGCAG CGACAGAGGG ACGAGCGCGC CGCTGCGGCC GGTGCGTGA
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Protein sequence | MLKWTRFNIV SVTLGFAFLY LPIVLLVIFS FNESKLVTVW GGFSTKWYVS LMSNQALLDA AWVTLRVGLL SATFATILGT MAALTLVRYT RFRGRMLFSG MVYAPLVMPE VITGLSLLLL FVAIGLDRGF WTITLAHTTL TMCFVAVVVQ SRLLSFDHSI EEAAQDLGAP PVRTFFEITL PIIAPAVASG WILAFTLSLD DLVIASFTSG PGATTLPMRI YSQVRLGVTP EINAVCTILI GIVALGVICA SIITKRRETQ RQRDERAAAA GA
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