| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rleg2_5705 |
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| Symbol | ligD |
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| ID | 6977096 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhizobium leguminosarum bv. trifolii WSM2304 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011366 |
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| Strand | + |
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| Start bp | 103682 |
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| End bp | 106333 |
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| Gene Length | 2652 bp |
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| Protein Length | 883 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 643393162 |
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| Product | ATP-dependent DNA ligase |
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| Protein accession | YP_002277980 |
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| Protein GI | 209546090 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG1793] ATP-dependent DNA ligase
[COG3285] Predicted eukaryotic-type DNA primase |
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| TIGRFAM ID | [TIGR02776] DNA ligase D
[TIGR02777] DNA ligase D, 3'-phosphoesterase domain
[TIGR02778] DNA polymerase LigD, polymerase domain
[TIGR02779] DNA polymerase LigD, ligase domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 26 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCCAGTG ACAACCTCTC GACATACCGA TCGAAGCGCG ACTTTAAAAA AACGGCGGAG
CCGAGCGGCG AGAAGCAGAT CGCGCGCAGC AATCGCCGTC GTTTCATCAT CCAGAAACAT
GACGCCACCC GGCTGCATTA CGACCTGCGG CTCGAGCTCG ACGGCGTCTT CAAATCCTGG
GCTGTCACCA AAGGCCCTTC GCTCGATCCG CACGACAAGC GGCTGGCCGT CGAGGTCGAA
GATCACCCGC TCGATTATGG TGATTTTGAA GGCACGATCC CGAAAGGGCA ATATGGCGGC
GGCACGGTGA TGTTGTGGGA CCGCGGCTAT TGGGAGCCTG AGGGAAAGAA GAGCCCGGAG
CAGGCGCTTG CCAAGGGCGA CTTCAAGTTC ACCCTCGAAG GCGAAAGGCT GCACGGCAGC
TTCGTCCTGG TGCGCATGCG CAATGACCGC GACGGCGGCA AGCGAACCAA CTGGCTGCTG
ATCAAGCACC ACGACGCGTT CTCGGTTGAG GAGAATGGCG CAGCCGTCCT GGAGGAGAAC
GACACCTCCG TCGCCTCCGG CCGGACGATG GATGCGATCG CCACGGGCAA GGGCCGCAAG
CCGAAGCCGT TCATGATCAA GGGCGGGGAT ATCAAGGCGG ATGCGGTCTG GGACAGCAAC
CAGGGGCTGG CCGCCGAAGA GAGGAAAGAG GAGGGTCGAG CCGGCAGGAC GCCGAAAACG
GCGGCAAAGG TCGACCTCCC GGATTTCATC GCGCCACAGC TTTGCCAGAC CCTGGAGCGG
CCGCCGGCCG GCGAGGGCTG GATTCACGAG ATCAAGTTCG ACGGCTACCG TATCCAGATG
CGCATACTCG ACGGCGAGGT AACGCTGAAG ACCCGCAAAG GGCTTGACTG GACCGGCAAA
TATCCAGAGG TCGCCGAGGC GGCATCGGCG CTGCCCGACG CCATCATCGA CGGCGAGATC
TGCGCTCTCG ACGACCATGG CGTACCGGAT TTCGCAGCCC TGCAGGCCGC CCTTTCGGAA
GGCCGGACCG GCGATCTCGT CTATTTCGCC TTCGATCTTC TTTACGAGGG TGGCGAGGAC
TTGCGATCCT TGCCTGTGAT CGAGCGCAAG GCGCGGCTTC AGAGCCTGCT TGCGGATGCC
GGTGACGACC CTCGGCTCCG TTTCGTCGAG CATTTCGAGA CCGGCGGCGA TGCGGTCCTT
CGCTCCGCCT GCAAGCTCTC CCTGGAAGGC ATCGTCTCCA AGCAGAGCGA TGCGCCCTAT
CAATCCGGCC GCACCGACAG CTGGGCCAAG TCGAAATGCC GCGCCGGCCA CGAAGTGGTG
ATCGGCGCCT ATGCCAAGAC CAACGGCAAA TTCCGATCGC TGCTGGTCGG CGTCTACCGC
GGCGACCACT TCGTCTATGT CGGCCGCGTC GGCACGGGAT ATGGCGCCAA GAAAGTGGAA
ACGTTGCTTC CGAAACTGCA AGCGCTCGAG ACGGCAAAAT CGCCCTTCAC CGGCATCGGT
GCGCCGAAGA AGGAGGCCGA GGTCACTTGG GTGAAGCCCA AGCTCGTGGC GGAAATCGAG
TTCGCCGGCT GGACCGCCGA CGGCATCGTC CGCCAGGCGG CCTTCAAGGG CCTGCGGGAG
GACAAGCCCG CCAGGGAGGT CAAGGCCGAA CGGCCGGCCA AGCCAGCGGA GACCGACGTG
CCGGAGCCGG AGCCGGCGGC GGAGGTGAAG GCGAGGCCAG CCCGCCGAAA GGGCGCCAAA
GCCGAGGTCA TGGGCGTGAT GATCTCCAAT CCGGACAAGC CGCTTTGGCC GGATGCCAAT
GACCGCAAAC CGGTGACCAA GGAGGAGCTG GCCCGCTATT ATGAAGCCGT CGGCGGCTGG
ATGATCGCGC ATATCGAGGG GCGCCCCTGT TCGATCATCC GTGCGCCCGA TGGGCTGGGC
GGCGAGCAGT TCTTCCAGCG CCATGCAATG CCCGGCACCT CGAACCTTCT CGAACTGGTC
AAGGTCTTCG GCGATAAAAA GCCCTATCTG CAGATCGACC GGGTCGAGGG CCTAGCGGCT
GTCGCGCAGA TCGGCGCCGT CGAGTTGCAC CCCTGGAATT GCCAACCGCA CAAGCCGGAG
GTGCCGGGCC GGCTGGTGTT CGACCTCGAC CCTGGCCCCG ACGTGCCGTT CTCGACAGTC
GTTTCCGCCG CCCGCGAGAT GCACGATCGG CTCGACGCGC TCGGTCTCGT CAGTTTCTGC
AAGACCACAG GCGGCAAGGG CCTGCACGTC GTCACGCCGC TTGCGATCAA TAAGCGCAAG
CCGCTTTCCT GGGCAGAGGC GAAGAGTTTT GCGCACGACG TCTGCCAGCA GATGGCGCGC
GACAATCCCG ATCTCTATCT GATCAAGATG ACCAAGAGCC TCAGGAACGG CCGTATCTTC
CTCGACTATC TCCGCAACGA CCGGATGGCG ACGGCCGTGG CGCCATTGTC GCCCCGTGCC
CGGCCGGGCG CCACCGTCTC GATGCCGCTG ACCTGGACCC AGGTCAAATC CGATCTCGAC
CCGAAACGCT TTACCATCCG CACCGTGCCG GCACTGCTGT CGAAATCGTC GGCCTGGGAA
GATTATAGCG ATGGCCAGCG CCCGCTGGAG CAGGCGATCA AACGGCTGAG CAAAGTCTCG
AACGCGGCGT GA
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| Protein sequence | MASDNLSTYR SKRDFKKTAE PSGEKQIARS NRRRFIIQKH DATRLHYDLR LELDGVFKSW
AVTKGPSLDP HDKRLAVEVE DHPLDYGDFE GTIPKGQYGG GTVMLWDRGY WEPEGKKSPE
QALAKGDFKF TLEGERLHGS FVLVRMRNDR DGGKRTNWLL IKHHDAFSVE ENGAAVLEEN
DTSVASGRTM DAIATGKGRK PKPFMIKGGD IKADAVWDSN QGLAAEERKE EGRAGRTPKT
AAKVDLPDFI APQLCQTLER PPAGEGWIHE IKFDGYRIQM RILDGEVTLK TRKGLDWTGK
YPEVAEAASA LPDAIIDGEI CALDDHGVPD FAALQAALSE GRTGDLVYFA FDLLYEGGED
LRSLPVIERK ARLQSLLADA GDDPRLRFVE HFETGGDAVL RSACKLSLEG IVSKQSDAPY
QSGRTDSWAK SKCRAGHEVV IGAYAKTNGK FRSLLVGVYR GDHFVYVGRV GTGYGAKKVE
TLLPKLQALE TAKSPFTGIG APKKEAEVTW VKPKLVAEIE FAGWTADGIV RQAAFKGLRE
DKPAREVKAE RPAKPAETDV PEPEPAAEVK ARPARRKGAK AEVMGVMISN PDKPLWPDAN
DRKPVTKEEL ARYYEAVGGW MIAHIEGRPC SIIRAPDGLG GEQFFQRHAM PGTSNLLELV
KVFGDKKPYL QIDRVEGLAA VAQIGAVELH PWNCQPHKPE VPGRLVFDLD PGPDVPFSTV
VSAAREMHDR LDALGLVSFC KTTGGKGLHV VTPLAINKRK PLSWAEAKSF AHDVCQQMAR
DNPDLYLIKM TKSLRNGRIF LDYLRNDRMA TAVAPLSPRA RPGATVSMPL TWTQVKSDLD
PKRFTIRTVP ALLSKSSAWE DYSDGQRPLE QAIKRLSKVS NAA
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