| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rleg2_1429 |
|---|
| Symbol | cpdB |
|---|
| ID | 6980157 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhizobium leguminosarum bv. trifolii WSM2304 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011369 |
|---|
| Strand | - |
|---|
| Start bp | 1453355 |
|---|
| End bp | 1455343 |
|---|
| Gene Length | 1989 bp |
|---|
| Protein Length | 662 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 643396150 |
|---|
| Product | bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase periplasmic precursor protein |
|---|
| Protein accession | YP_002280949 |
|---|
| Protein GI | 209549032 |
|---|
| COG category | [F] Nucleotide transport and metabolism |
|---|
| COG ID | [COG0737] 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases |
|---|
| TIGRFAM ID | [TIGR01390] 2',3'-cyclic-nucleotide 2'-phosphodiesterase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 26 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 20 |
|---|
| Fosmid unclonability p-value | 0.811098 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCTTCCA TTTTCGATGT GGGTGTGATG AGTCGCCGTT CCCTGCTTGG CGGCCTTGCC
GCCACCTCCG CCCTGGTGCT GCTGCACCCC TTCAGCGCGC GCGCCAGCGC CAACCAGGCC
CATCTCCGGC TGATGGAAAC GACGGATATT CACGTCAACG TCTTCCCCTA TGATTATTAC
GCCGACAAGC CGAACGACAC GATGGGGCTT TCCCGCACCG GGACGATCAT CGACAATATC
CGCGCCGAGG CCGTCAACTC GCTGCTGATT GACAATGGCG ACGTGCTGCA GGGCAATCCG
ATGGGCGACT ACATGGCCTA CCAGCACGGC ATGAAGGACG GCGACGTCCA TCCCGTGATC
AAGGCGATGA ACACACTCGG CTACACGGTG GGAACGCTCG GCAATCACGA GTTCAATTAC
GGGCTCGACT TCATGTTCAA GGTGCTATCG GGCGCGAACT TCCCCTTCGT CTGCGCCAAT
CTGACCAAGG GCCAGCTCGC CTCGGACCCA AAGCAGGACG ATCTGTTCTT CAAGCCGTAC
ATGATCGTGG AAAAACAGAT CAAGGACGGC GCCGGCAATG AGAGCCCTGT CAAGATCGGC
TTCATCGGCT TCGTGCCGCC GCAGATTATG CTCTGGGACA TCAAGAACCT CGAAGGCAAG
GCGCAGACAC GTGATATCGT CGAGGCCGCC AAGGCCTGGG TTCCGGCCAT GAAGGAAGCC
GGCGCCGATA TCGTCATCGC GCTTTCCCAT TCCGGCATCG ATGGAGCCGC GCCGTCCGAA
AAGATGGAAA ACGCCTCGCT GCATCTCGCC GCCGTCGAGG GGATCGACGC GATCTTCACC
GGCCATCAGC ATCTCGTCTT CCCCGGGCCG AAGAGCTGGG ACGGCATTGC CAATGCCGAT
CCGGTCAAAG GCACGCTGCA TGGCAAACCC GCCGTGATGG CAGGCTTCTG GGGCTCGCAT
CTCGGCCTTA TCGACCTGCT GCTGGAAAAG GACGGCAACA GCTGGAAGAT CGTCGACTTC
ACCTCGGAAG CACGGCCGAT CTACCATCGT GACGACAAGA AGAAGGTGGT TGCCGACTAC
GCCGACAAGA AGGAAGTGGT CGAGGCGGCA AAGGCCGAAC ACGAGGCGAC GCTTGCCTAT
GTCCGCACCC CCGTCGGCAA GACGTCGGCG CCGCTCTATT CCTACTTCGC GCTCGTCGCC
GACGATCCTT CCGTGCAGGT CGTCAGCCAG GCTCAGACCT GGTACATCAA GCAGATGCTG
GCCGATACCG CGTTCAACGA TCTGCCGGTG CTTTCAGCCG CTGCCCCCTT CAAGGCCGGC
GGCCGCGGCG GCGCCGATTA CTATACCGAC GTTCCAGCCG GCGATATCGC CATCAAGAAC
GTCTCCGACC TCTATCTCTA CCCGAATACG GTGCAGGCTG TCGCCATCAC CGGCGCCCAG
GTGAAGAACT GGCTGGAAAT GTCGGCCGGC ATGTTCAATC ATATCGAGCC CGGCTCGAAG
GATGCGCCGC TGCTCAACAA CGACTTCCCG TCCTATAATT TCGACGTCAT CGACGGCGTG
ACCTACCAGA TCGATCTATC GCAGCCGCCG AAATATGATT CCTCCGGCAA GGCGATCAAT
CCGGATGCCA ACCGCATCCA GAACCTCGCC TTCAGCGGCA AGCCGATCGA TCCCGCCCAG
AAATTCGTCG TCGTCACCAA CAATTATCGC GCCGGCGGCG GCGGCAGTTT CCCGGAGATC
GCTGCTGATA AGGTGATCTT CCAGGCGCCG GACACCAACC GTGACGTCAT CGTCCGCTAT
GTCCACGACC AGGGCACGAT CAATCCGTCG GCCGATGCGA ACTGGACCTT CAAGCCGCTG
CCGGGCACGA CGGCGACCTT CGAGAGCGGC CCGAAGGCCA AGCAGTTCCT CGCTGCGGTC
AAGAGCGTCA AGATCGAAGA TGCCGGCGAC GGTGCCGACG GCTTCTCGAA GTTCAGGCTG
GTGCTTTAA
|
|---|
| Protein sequence | MSSIFDVGVM SRRSLLGGLA ATSALVLLHP FSARASANQA HLRLMETTDI HVNVFPYDYY
ADKPNDTMGL SRTGTIIDNI RAEAVNSLLI DNGDVLQGNP MGDYMAYQHG MKDGDVHPVI
KAMNTLGYTV GTLGNHEFNY GLDFMFKVLS GANFPFVCAN LTKGQLASDP KQDDLFFKPY
MIVEKQIKDG AGNESPVKIG FIGFVPPQIM LWDIKNLEGK AQTRDIVEAA KAWVPAMKEA
GADIVIALSH SGIDGAAPSE KMENASLHLA AVEGIDAIFT GHQHLVFPGP KSWDGIANAD
PVKGTLHGKP AVMAGFWGSH LGLIDLLLEK DGNSWKIVDF TSEARPIYHR DDKKKVVADY
ADKKEVVEAA KAEHEATLAY VRTPVGKTSA PLYSYFALVA DDPSVQVVSQ AQTWYIKQML
ADTAFNDLPV LSAAAPFKAG GRGGADYYTD VPAGDIAIKN VSDLYLYPNT VQAVAITGAQ
VKNWLEMSAG MFNHIEPGSK DAPLLNNDFP SYNFDVIDGV TYQIDLSQPP KYDSSGKAIN
PDANRIQNLA FSGKPIDPAQ KFVVVTNNYR AGGGGSFPEI AADKVIFQAP DTNRDVIVRY
VHDQGTINPS ADANWTFKPL PGTTATFESG PKAKQFLAAV KSVKIEDAGD GADGFSKFRL
VL
|
|---|
| |