| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rfer_4387 |
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| Symbol | |
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| ID | 3959924 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodoferax ferrireducens T118 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007901 |
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| Strand | + |
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| Start bp | 151078 |
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| End bp | 153234 |
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| Gene Length | 2157 bp |
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| Protein Length | 718 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 637909595 |
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| Product | diguanylate cyclase/phosphodiesterase |
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| Protein accession | YP_516071 |
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| Protein GI | 89885873 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2202] FOG: PAS/PAC domain
[COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAACGCGT TTCTCAACGC GATCTATGAA GATCAGGAAA TCTTGGATTT GGTCATCGGG
GAGCCCCTTA ACTCGGTCGC CTCCTACCTG CCCGCCCTGC TTACGGCCGT CAATGCCTGC
CTGGTCTTGT CCGTCACAGA CTGCGACGGC GTGATTCTCT TTGCCACCGA CCGGTTCTGC
GAACTTAGCG GCTTCGATAA AGACGACCTC ACCGGCAGAC GACATAACAT CGTGAGCTCG
GGCACTAGCT CGGAATCGTT CTACCGCGAT ATGTGGGACA CGGTGCTGAG CGGGAAAAGA
TGGACGGGAG AGATATGCAA CCGCGCCAAG GATGGCTCCC TCTACTGGGT CGACACCACC
ATCCTGCCCT TCACCGACAC CCACGGGAAA ATCACCCGCT TCGTGGCCAT TTGTAACGAC
GTCACCAATA AAAAACAAGC CGAGCAACAA CTCAATCAAA GCCGCCAACG GCTTAAGTCC
CTGCTGCTGA TGTCCGGCGA CTGGTACTGG GAGCAAGACA CCCAATTTCG CTTTACCCTA
CTCTCCGATG GCTTCAAAAA GACCGGCAAG GACCCGGCCG CCTTTCTTGG CCAGACCAGC
TGGGACGCCC AGTGCGCCCA GGACGAAGCC TTATGGCATA AGCACCGCGC AACCCTGCAG
TCGCAGCAGC CCTTTCGTGA CTTCGAGTTT CTGGTCACCA GCGACCAGAA CACGGGCCTG
CCGGTGTGGT TTAGCCTCTC GGGTGAGCCC ACCTACGACG AACGCGGCCA GTTCATGGGC
TACCAGGGCG TGGGGCGCGA CATTTCAACG CGGTTTTCTG ATCAGGCGCA GCTCTGGAAA
CTCTCCAACC TCGATTCGTT GACCGGCCTA CCCAACCGGT CCAGATTTGA GACCACGCTC
GATCGGTGCG TTGAAAGCGG TAAAGCCAGC GGTGAACCGT TCGCCCTTGT CATGATCGAC
ATCGACAACC TCAAAGTCGT CAACGACTCC ATGAGCTTTC TCGCCGGCGA TGAACTGCTC
AAGATCATGG CCAGGCGGCT TTCGTGTTCC GTGCGCCAGA CGGACTTCAT CAGCCGCCTC
AGCGGCGATG AGTTTGCTGT CATCCTGCTG GACCTGGGTA CGGTCAAGGA TATCCACCGG
CTCATTGAGA CGCTGCGCTG CACCCTGGAG GCCCCCACCG ACAATGCCGA GCAGGGCCGG
TGCACCCTCA GTCTCGGCGC CAGCCTCTTT CCTGCGCACG CCAGTGCAAG CGCCGACCTC
ATCAAGAACG CCAATATCGC CCTGCATCGC GCGAAGTCCA ACGGCGGGGG GCAGTGCGTC
CTGTTTGAAT CCGAACACAA ACACCGGGTC GACCGCAGAG CAACCGTCCT GCGTGCCATT
GAGCAGGCCA TCAGTGTGGA CCGTCTGATG CTGTACTACC AGCCAGTCGT CAACCCGGTG
ACCCGGGCAG TCGTGTCGTT TGAAGCCCTG TTGCGCTGGA ATCATCCCAA AAACGGGATC
ATCTCGCCCG GTGAGTTTCA GGAAGTGTTC GAAAACCGCG CGCTCACTGC GCGCATCGGT
AAGTTCGTCA CTGACATGGC CATCAAGCAA GCCGCGCTGT GGTCGCGCGA GCGAGTTGAC
TTTCACAAAA TAGCCATCAA CGTGACCACG GCCGACTTTG TCCTCGGGGG CTTCCCGATC
TGGCTGGCCG ACCGGCTGAT GCACTACGGG GTCGACCCCG CGCAGATCTG CGTTGAGGTC
ACCGAAGGCA TGTTCCTGGG TCCATCGGCT GAACTGGTTC TGAGTGGCCT GCAAATCGTC
CATGACATGG GCGCGGAGAT TGCCTTTGAC GACTTCGGCA CCGGCTACGC CTCGCTGATG
CACCTGAAAA TGCCCATCGA CCGGCTCAAA ATCGAACGGA CATTCGTCAC CAACATCGAA
AACGACAAGA CCAACGCCGC CATCATCGAG GCGATCGTGC AGCTCGGGCG CAGGCTGGGC
AAAGGCATCA CGGTCGAGGG TGTGGAGACG CAGGCGCAGG CCGACATCCT TCTGGCCATC
GGCTGCAGTC AATTCCAGGG CTACCTGTAC AGCAAACCGC TGCCGGCGCA CCAGGTGGCG
AGCTTCATTG CCTCGTATTC AGGTTCAAAA ACCACAGCCT CGCAACTTTC CGCATAG
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| Protein sequence | MNAFLNAIYE DQEILDLVIG EPLNSVASYL PALLTAVNAC LVLSVTDCDG VILFATDRFC
ELSGFDKDDL TGRRHNIVSS GTSSESFYRD MWDTVLSGKR WTGEICNRAK DGSLYWVDTT
ILPFTDTHGK ITRFVAICND VTNKKQAEQQ LNQSRQRLKS LLLMSGDWYW EQDTQFRFTL
LSDGFKKTGK DPAAFLGQTS WDAQCAQDEA LWHKHRATLQ SQQPFRDFEF LVTSDQNTGL
PVWFSLSGEP TYDERGQFMG YQGVGRDIST RFSDQAQLWK LSNLDSLTGL PNRSRFETTL
DRCVESGKAS GEPFALVMID IDNLKVVNDS MSFLAGDELL KIMARRLSCS VRQTDFISRL
SGDEFAVILL DLGTVKDIHR LIETLRCTLE APTDNAEQGR CTLSLGASLF PAHASASADL
IKNANIALHR AKSNGGGQCV LFESEHKHRV DRRATVLRAI EQAISVDRLM LYYQPVVNPV
TRAVVSFEAL LRWNHPKNGI ISPGEFQEVF ENRALTARIG KFVTDMAIKQ AALWSRERVD
FHKIAINVTT ADFVLGGFPI WLADRLMHYG VDPAQICVEV TEGMFLGPSA ELVLSGLQIV
HDMGAEIAFD DFGTGYASLM HLKMPIDRLK IERTFVTNIE NDKTNAAIIE AIVQLGRRLG
KGITVEGVET QAQADILLAI GCSQFQGYLY SKPLPAHQVA SFIASYSGSK TTASQLSA
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