| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rfer_4163 |
|---|
| Symbol | |
|---|
| ID | 3961861 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodoferax ferrireducens T118 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007908 |
|---|
| Strand | - |
|---|
| Start bp | 4633312 |
|---|
| End bp | 4635030 |
|---|
| Gene Length | 1719 bp |
|---|
| Protein Length | 572 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 637918982 |
|---|
| Product | electron-transferring-flavoprotein dehydrogenase |
|---|
| Protein accession | YP_525387 |
|---|
| Protein GI | 89902916 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG0644] Dehydrogenases (flavoproteins)
[COG2440] Ferredoxin-like protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCCCCATT ATCAGATGAG TTCAACCATG ACAAACCAGG AAATCTTGGC CCAGTTTGGC
CCCCGCGAAG CGATGGAATA CGACGTCGTT GTTGTTGGAG GCGGCGTTGC CGGCCTGTCC
ACCGCCATCC GCCTCAAGCA ACTGGCCACT GAAAAAGGCC AGGAGCTGTC GGTGGTGGTG
CTGGAAAAAG GCGCCGAGCC CGGCGCCCAC ATCCTCTCGG GCGCCATCAT GGATCCCGTT
GCCATGAATG AACTGTTCCC CGACTGGAAG GCCATGGGCG CGCCCCTGAA CCAGCCGGTG
ACCGATGACG CCATGATGTT CCTGAGTGAA ACCTCGGGCT ATCGCACGCC CAATTTTCTG
CTGCCCAAAT GCAGCCATAA CCACGGCAAC TACATCATCA GCCTGGGCGA GCTGACGCGC
TGGCTGGCGA CCCAGGCCGA AAACATGGGC GTGGAAATAT TCCCCGGCTT TGCCGCCGCT
GAAGTGCTTT ACAGCGAGCA AGGCGCCGTC AGAGGGGTCG CCACCGGCAA TATGGGTGTG
AACAAGGAAG GCGAACCGGG CGAGAATTTC CAGATCGGCA TGGAGCTGTT GGCCAAATAC
ACCATTTTTG CCGAAGGCTC ACGCGGTCAT CTGGGGCGCC AGCTGATTGC CAAGTACAAG
CTTGACGAGG GCTGTGATCC GCAAAGTTAT GGTTTGGGCA TCAAGGAGGT TTGGGAGGTG
GACCCCTCGC GCCACCAGCC TGGCTTTGCC ATGCACACCG CAGGCTGGCC GCTGGACAAC
AGCACCTACG GCGGCTCCTT CATGTACCAC ATGGGGGACA ACAAGATCGC GCTGGGCTTC
ATCACCGGGC TGAACTACCA GAACCCATTC TTAAGCCCGT TCGAGGAGTT CCAGCGCTGG
AAAACCCATC CCAATGTGCG CTGGTATTTT GAGAACGACA AGGGCGAAGT CACCGCCAAG
CGGCTGGCCT ATGGTGCGCG CACCATCACC GCCGGCGGTT TGCTGGCGCT GCCCAAGACC
GTGTTCCCGG GCGGCGCCCT GGTGGGTTGC GAAGCGGGCT TCCTGAACGT GAGCCGCATC
AAGGGCAGCC ACACGGCCAT CAAGACCGGC ATGCTGGCAG CCGAGGCGGC GTTTGAGGCC
GTCACGGCCG GACGCCAGCA TGACGAACTG AGCGCCTACC CCGAGGCGTT TGAGAAGAGC
TGGGTCTATA CCGAACTCAA TAAATCGCGC AACTTCAAGG CCTGGTTCAA GTACGGCTTG
CGCATCAGCA CCCTGATGAA CGGTTTCGAG CAGTTCGGAC TGGGGGGCAA CATGCCCTGG
ACCATTCACC GTGACAAGCC CGACCATGCC TACCTGAAAC CAGCCGCCGA GTGCCAACCC
ATTGTTTACC CCAAGCCCGA CGGCAAGCTC ACCTTTGACC GCTTGAGCAG CGTCTTCATC
GGCAACGTCA ACCATGAAGA AAATCAGCCC GCGCACTTGA CACTCAAAGA CGCGTCGGTG
CCGGTTGCCA TCAACCTGGC CAAGTTTGCC GGCCCCGAGG CGCGCTACTG CCCGGCCGGG
GTTTATGAGT TTGTCAAGAA CGATGACGGC ACCGACCGAC TGCAGATCAA CGCTTCCAAC
TGCGTGCACT GCAAGACCTG CGACATCAAG GACCCGACGC AGAACATCGT CTGGGTCACG
CCCGAAGGGG GCGGTGGGCC GAACTACGCG GGGATGTAG
|
|---|
| Protein sequence | MPHYQMSSTM TNQEILAQFG PREAMEYDVV VVGGGVAGLS TAIRLKQLAT EKGQELSVVV
LEKGAEPGAH ILSGAIMDPV AMNELFPDWK AMGAPLNQPV TDDAMMFLSE TSGYRTPNFL
LPKCSHNHGN YIISLGELTR WLATQAENMG VEIFPGFAAA EVLYSEQGAV RGVATGNMGV
NKEGEPGENF QIGMELLAKY TIFAEGSRGH LGRQLIAKYK LDEGCDPQSY GLGIKEVWEV
DPSRHQPGFA MHTAGWPLDN STYGGSFMYH MGDNKIALGF ITGLNYQNPF LSPFEEFQRW
KTHPNVRWYF ENDKGEVTAK RLAYGARTIT AGGLLALPKT VFPGGALVGC EAGFLNVSRI
KGSHTAIKTG MLAAEAAFEA VTAGRQHDEL SAYPEAFEKS WVYTELNKSR NFKAWFKYGL
RISTLMNGFE QFGLGGNMPW TIHRDKPDHA YLKPAAECQP IVYPKPDGKL TFDRLSSVFI
GNVNHEENQP AHLTLKDASV PVAINLAKFA GPEARYCPAG VYEFVKNDDG TDRLQINASN
CVHCKTCDIK DPTQNIVWVT PEGGGGPNYA GM
|
|---|
| |