| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rfer_4030 |
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| Symbol | |
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| ID | 3961709 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodoferax ferrireducens T118 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007908 |
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| Strand | + |
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| Start bp | 4493463 |
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| End bp | 4494959 |
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| Gene Length | 1497 bp |
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| Protein Length | 498 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 637918854 |
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| Product | diguanylate cyclase |
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| Protein accession | YP_525259 |
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| Protein GI | 89902788 |
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| COG category | [P] Inorganic ion transport and metabolism
[T] Signal transduction mechanisms |
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| COG ID | [COG2199] FOG: GGDEF domain
[COG2703] Hemerythrin |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain
[TIGR02481] hemerythrin-like metal-binding domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTTCGTGG CAAGCGGAAT GCATATATTT GCAAAGAACT ACGGCGTTGC TGCCTGGGCA
CTTCTGGCGC TGCTTTTTTT GCTCTATCCC CATGTTCAAT ATTGGCGCGC GGCCAGAGCC
GCCGATAGCG TGAAAACGGA GTTGGACAAC CTGCTGATTG ACTCTTTTTT ACTGGGCCTG
TTCATGGCGG CACTGGAATT CCCCCTTTGG CTAAGCTTTG CAGCCATCAT GGCCACCTTG
ACCAATAACG CGGCCAACAA GGGCTGGCCC AGTGTGCCGA AAAACGTGCT GGCCATGCTG
GCCGGCGCAC TGATATGGGT CACGGTGCGC GGATTCAAGT TCTCGCCCGA TACCGGCTGG
CCGCTCACGA TTTTTTGCAT GGTGGGCATC TGCGGCTATG TGCTCGTGAT CGGCAATGTC
GGATTCCAAA GAAACCTCCA GCTGCGCCGG GTTCGGGAGG AGTTGCGAAC GCGTGAACAA
GAACTGTTGA AAGCCAACCA GAGCCTGGTC GTCAATCTCC AGGAAATTGA AGCCCTGCAG
CAACAGCTGC GTGAGCAGGC CAGCCGGGAT TCGCTGACCG CGCTGTACAA CCGTCGCTAC
CTCGACACCA CGCTGGACAG AGAACTGGCG AGCTGCAAGC GCGAAGGCAA GCCCCTGTCC
CTGATCATGA TTGATGTCGA TGACTTCAAG AAATACAACG ATCTTCACGG CCATCAGGCC
GGCGATCAGT GTTTGATCGC CGTTGCGAAA ACCTTGCAGG CGAGCGCCAA GCGGGCCAGC
GATCTGGCAG CGCGATATGG CGGTGAAGAA TTCTTGCTGG TCTTGCCGGG CATGGACGCG
ACGGCCGCAC AAGGGCTGGC CGAGGAGCTG CGCCGGTCCG TCGAAGCGTT GAAGATTCCC
CACGAGCAGT CGCGCGGCGG CAGCGTCACC ATCAGCATCG GCCTGGCGGT CATGACGAAT
GACAGCCACA AGGATGTCGC GGGTTTATTG CGCGCCGCGG ACGAAGCCCT CTACCACGCC
AAGCATGGCG GGCGTAATCA GGTTCGCCTT GCTACGCAAA CGCGCCGTGC GGCGCGCGTG
GCGGAAAGTG TCGCGGTGAA TCTGGTTCAA CTGGTCTGGC ATCCGGCCTA CGAATCGGGT
CAAGCCGAAC TTGACGCCCA GCATCGAGCC TTGTTTGGGC ACGTCAACAA CATCCTTGCC
GCCTTGCTGC TGGAGCGACC GGTCGACGAG GTTGCAGCAC TCATTGACAC GCTGATTGGC
GATGTTGCCA AACATTTTGA GGACGAGGAA AAAATCATTT TGGCCGCCGG TTTTCCCGGC
GCAGCGGCGC ATGCCGCCAT GCACCGTGAA CTCATCGCCC ACGCCGGCTA TCTGGTCAGC
CGCTTTAAAA CCAGGGACCT TGACAGGGGG GAGCCGTTTC AATTCCTTGC ACATGACCTG
GTCGCTCGGC ACATACTGGG GGAGGATCGT GAGTTTTTCC CCCATTTGAG CGCCTAA
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| Protein sequence | MFVASGMHIF AKNYGVAAWA LLALLFLLYP HVQYWRAARA ADSVKTELDN LLIDSFLLGL
FMAALEFPLW LSFAAIMATL TNNAANKGWP SVPKNVLAML AGALIWVTVR GFKFSPDTGW
PLTIFCMVGI CGYVLVIGNV GFQRNLQLRR VREELRTREQ ELLKANQSLV VNLQEIEALQ
QQLREQASRD SLTALYNRRY LDTTLDRELA SCKREGKPLS LIMIDVDDFK KYNDLHGHQA
GDQCLIAVAK TLQASAKRAS DLAARYGGEE FLLVLPGMDA TAAQGLAEEL RRSVEALKIP
HEQSRGGSVT ISIGLAVMTN DSHKDVAGLL RAADEALYHA KHGGRNQVRL ATQTRRAARV
AESVAVNLVQ LVWHPAYESG QAELDAQHRA LFGHVNNILA ALLLERPVDE VAALIDTLIG
DVAKHFEDEE KIILAAGFPG AAAHAAMHRE LIAHAGYLVS RFKTRDLDRG EPFQFLAHDL
VARHILGEDR EFFPHLSA
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