Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rfer_3893 |
Symbol | |
ID | 3961514 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodoferax ferrireducens T118 |
Kingdom | Bacteria |
Replicon accession | NC_007908 |
Strand | - |
Start bp | 4344021 |
End bp | 4346582 |
Gene Length | 2562 bp |
Protein Length | 853 aa |
Translation table | 11 |
GC content | 62% |
IMG OID | 637918718 |
Product | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) |
Protein accession | YP_525123 |
Protein GI | 89902652 |
COG category | [E] Amino acid transport and metabolism [T] Signal transduction mechanisms |
COG ID | [COG0834] ABC-type amino acid transport/signal transduction systems, periplasmic component/domain [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
TIGRFAM ID | [TIGR00229] PAS domain S-box [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
Num covering plasmid clones | 10 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | TTGTATTTGT TCAATTTGTT GCCCGCCGCC TGGCGCCTGC GTGTGCCGCG TACCTTGCTG GCGCTTTGCG CGCTGGCCCT GCTGACTGCG CCAACGCTGG CGCGCGAGGT GCGCGTGGGC GTCTACCAGA ACGAGCCCAA GATATTCATG GGCGCCGATG GCCAGCCCAG CGGCATCCTG GGCGACCTGC TGGTGGCGAT GGCCCGGCTG GAGGGTTGGA CACTCAAGCC GGTGCCCTGT GAATGGGCGG CCTGCCTGGA CGCCTTGCAG GCGGGCAATA TCGACCTGAT GCCCGACCTG GCTTTGAGCG AGCAGCGCTT GCAGATTTTT GACGTTCACA AGATTCCCTC GCTCTTGAGC TGGTCGCAGC TTTACAAACA CAGCGGCGTC CCGATCAGCT CCATGCTGGA CCTCAAGGGC AAGCGGGTGG CGGTGCTGGC GGGGTCGGTG CAGCAGGCGT ATCTGCAGAA CCTGCTGAGC AGTTTTGCTG TGCAAGCTGA ATTGGTGCCC GTCCAATCGC TGGAGGAGGC TTTTAAACTG ACAGCCGCGC ACCAGGTCGA TGCGGCGGCG ACCAACCGCT TTTTTGGCGA TCGACGTGCC GCCAGCTACC AACTGGACGC GACACCGATC CTGTTTCAGC CAGCCCAACT TTTTTACGCC ACCGCCAAGG GGCGCAATGC GGATTTGTTG GTCGCCATCG ATCGGCATCT GGGGCAATGG CAGTCGCAAG CCGACTCCGA ATACTTCACG GTGCTCAAGC GCTGGATCGA GGCGCCGCCG CAATTTTCTG TGCCCGCCTA TTTGTGGTGG AGTCTGGGTG CTTTGGCGCT GCTGCTGGCG CTGGCGCTGG CCGGCAGCGC GCTGCTGCGC CGTCAAGTGG CCGACAAAAC CCGCCATTTG CGCGCCAGCG AAGACCGGCT CGCCACCATT CTCAACAGCG TTGATGCCTA TATTTATATC AAAGACATGG AGTTGCGCTA CCAGTACGCC AACCGCAAGG TCTGCGAGTT GTTTGACCGG CCCCTGGCGC AAGTGGTGGG CAGCACTGAC AGCGAGTTCT TTGATGCCAC CACGGTCGAG CGCTTACGCA TCAATGACAA GCGGGTGATC GACAACGGCG AGCGGGTCGA GGCCGACGAG GTCAGCCGCA GCCTCGATGG CAGCCGGGAA CAAACCTACC TGTCGATCAA ATTGCCCCTG CGCCAACCCG ATGGCAGCAT CTACGCCCTG TGCGGCATTT CCACCGACAT TACCGAACAC AAGCGTTCTG AGGACGCCAT TCACCAGCTC GCTTTTTACG ACCCCCTGAC GCTGCTGCCG AATCGCCGTT TCTTGATGGA GCGTCTGCAG CAAACCCTGA AAGCCAATGA GCGTCAACAA CAGTGCGGCG CTCTGCTGTT CATTGACGTT GACAATTTCA AAGACCTCAA CGACACGCTG GGGCACGCGA TGGGTGACGA GCTGTTGCGC CAGATGGCGG TGCGCTTGAG CACCTGCACG CGCGCCGAAG ATACGCTGGC GCGTCAGGGC AGCGATGAAT TTGTGCTGCT GCTGTGCGAC CTGAGCCCCG ATCTGGACGC GGCGCTGGAG CAAACCCGGC ATGTCGCTCA AAAAATACTG CAACACATCG CTGAACCCTA CCTGCTGGAA ACCCGCCACT ACCAGAGCAC GGTCAGCATT GGCATTGCCA TGTTTGGCGA CACGCCAACC AGCCGAGACG AGTTGTTCAA GCAGGCTGAC CTGGCGATGT ACCGGGCCAA GGCCGAGGGT CGCAACGCCT TGTGCTTTTT TAACCCCGCC ATGCAGGCCC AGGTGACAGC CCGCACGGCG ATCGAGGCCG ATCTGCACCA GGCGCTGGCG CGATCCGAGT TTGTGCTGTA TTACCAGCCG CAGGTGAACA TCGACGGCCA GCAGTTCGGG GTCGAAGCCC TGGTGCGCTG GCAGCATCCG CAGCGCGGAC TGGTGCCGCC GCTGGAGTTC ATCCCGATTG CCGAGTCGAC CGGCCTGATC CTGCCCCTGG GGCGCTGGAT TTTGAGTACG GCCTGTCGAC AACTGGTGGC GTGGGCGGCC AGCCCTGAGC AGGCGCATTG GAGCATTGCG GTCAACGTCA GTGCGCGCCA GTTTCGCCAG AGTGACTTTG TGCAGACGGT CGAGCAAGTA CTGCGCGATA CCGGCGCCAA CCCGCAGCGC CTGGAGCTGG AGCTGACCGA GAGCCTGCTG GTCGACGATG TGGAGGTCGT GATTGCGCGC ATGAGCGCGC TCAAGGCGCT GGGTGTGCGC TTCTCGCTCG ACGATTTTGG TACTGGCTAC TCCTCGCTGA GCATGCTCAA ACGCCTGCCG CTGGACCAGC TCAAGATTGA CCGCTCGTTT GTGCGCGATT TACGCCACGA TCCGCAGGAT GCCAACATTG TCAAGGCCAT TGTTACCTTG GGGTTTGCCA TGAACCTGCA GGTTATTGCG GAAGGGGTCG AGACAGCCGA GCAACGTGAT GCACTGGTGA ACCTGGGCTG CACCCATTTT CAGGGCTATC TGTTTGGCCG CCCGGCGCCG GCGCCGGCCT AA
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Protein sequence | MYLFNLLPAA WRLRVPRTLL ALCALALLTA PTLAREVRVG VYQNEPKIFM GADGQPSGIL GDLLVAMARL EGWTLKPVPC EWAACLDALQ AGNIDLMPDL ALSEQRLQIF DVHKIPSLLS WSQLYKHSGV PISSMLDLKG KRVAVLAGSV QQAYLQNLLS SFAVQAELVP VQSLEEAFKL TAAHQVDAAA TNRFFGDRRA ASYQLDATPI LFQPAQLFYA TAKGRNADLL VAIDRHLGQW QSQADSEYFT VLKRWIEAPP QFSVPAYLWW SLGALALLLA LALAGSALLR RQVADKTRHL RASEDRLATI LNSVDAYIYI KDMELRYQYA NRKVCELFDR PLAQVVGSTD SEFFDATTVE RLRINDKRVI DNGERVEADE VSRSLDGSRE QTYLSIKLPL RQPDGSIYAL CGISTDITEH KRSEDAIHQL AFYDPLTLLP NRRFLMERLQ QTLKANERQQ QCGALLFIDV DNFKDLNDTL GHAMGDELLR QMAVRLSTCT RAEDTLARQG SDEFVLLLCD LSPDLDAALE QTRHVAQKIL QHIAEPYLLE TRHYQSTVSI GIAMFGDTPT SRDELFKQAD LAMYRAKAEG RNALCFFNPA MQAQVTARTA IEADLHQALA RSEFVLYYQP QVNIDGQQFG VEALVRWQHP QRGLVPPLEF IPIAESTGLI LPLGRWILST ACRQLVAWAA SPEQAHWSIA VNVSARQFRQ SDFVQTVEQV LRDTGANPQR LELELTESLL VDDVEVVIAR MSALKALGVR FSLDDFGTGY SSLSMLKRLP LDQLKIDRSF VRDLRHDPQD ANIVKAIVTL GFAMNLQVIA EGVETAEQRD ALVNLGCTHF QGYLFGRPAP APA
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