Gene Rfer_3812 details

Gene Information

• Locus tag: Rfer_3812
• ID: 3960067
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Rhodoferax ferrireducens T118
• Kingdom: Bacteria
• Replicon accession: NC_007908
• Strand: +
• Start bp: 4251486
• End bp: 4252172
• Gene Length: 687 bp
• Protein Length: 228 aa
• Translation table: 11
• GC content: 63%
• IMG OID: 637918638
• Product: activator of osmoprotectant transporter
• Protein accession: YP_525043
• Protein GI: 89902572
• COG category: [T] Signal transduction mechanisms
• COG ID: [COG3109] Activator of osmoprotectant transporter ProP

Plasmid Coverage information

• Num covering plasmid clones: 13
• Plasmid unclonability p-value: 0.31951
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGACCCGTA CTACACCCGA AGCACCCGCC CAAGCCGATA CACCGACGCA GCCCGCAGAG 
CAAGCCAGCA AGCCCGGGCG CTCGCAAGCT GTCCAGCCCG TGCTGGAGAA GCTGTTTGAA 
CTCTATCCGC ATCTGTTTGG CGCCGAGTTC CTGCCGCTCA AGCTTGGTAT TTTTCAGGAG 
CTGCTGGCCC TTCACCCCGA GCAGTTCCAG CGCGACAGCC TCAAGCTGGC ACTGGGCCTG 
CACACCCGCT CGACGCGCTA CCTGCAAAGT GTTGCCGCAG GCAAGCCGCG CCATGACCTG 
CAGGGCGCAG CGGTGGAAGC TGTCGCCCCG GAGCATGTGC ACTTCGCCCT GCTGGAGCTG 
TTTCGCCGTC GGCAAGGCCG CACCCAGGCC GATTTGCGGC CAAAATTGCG GGCCCAATTG 
CTCGCCGCGT TTGCCGCGTC CGGCTTGACA CGCCAGGAGT ACCAGGCCAG GGTGCTGACA 
AAAGATGCGA GCGCCAATAC CTTGCTGGAG GAAGCATTTG CCGAACTGGA TCAAAAGTTG 
GCCAAGCAAG AGGCCTTGCT CAGAGCCTTC AACAGCAGCG GCAAGACACC CGCAGAGTTT 
GCCGACATGT ACGGACTGGA TCAGCGCGAC GTCATGCTGG TGCTGGATCA GGGTCGCAGC 
CAGCCGGTGC CCGCTGTCAA ACCCTAG 

 

Protein sequence

MTRTTPEAPA QADTPTQPAE QASKPGRSQA VQPVLEKLFE LYPHLFGAEF LPLKLGIFQE 
LLALHPEQFQ RDSLKLALGL HTRSTRYLQS VAAGKPRHDL QGAAVEAVAP EHVHFALLEL 
FRRRQGRTQA DLRPKLRAQL LAAFAASGLT RQEYQARVLT KDASANTLLE EAFAELDQKL 
AKQEALLRAF NSSGKTPAEF ADMYGLDQRD VMLVLDQGRS QPVPAVKP