Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rfer_3782 |
Symbol | |
ID | 3962415 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodoferax ferrireducens T118 |
Kingdom | Bacteria |
Replicon accession | NC_007908 |
Strand | + |
Start bp | 4226266 |
End bp | 4227957 |
Gene Length | 1692 bp |
Protein Length | 563 aa |
Translation table | 11 |
GC content | 58% |
IMG OID | 637918608 |
Product | SSS family solute/sodium (Na+) symporter |
Protein accession | YP_525013 |
Protein GI | 89902542 |
COG category | [R] General function prediction only |
COG ID | [COG4147] Predicted symporter |
TIGRFAM ID | [TIGR00813] transporter, SSS family |
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Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 0.804193 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGACGCGTC TATCGCAATT TAAAGGCGCG ATCGCGCTGT TCTCACTGCT GGCACTTTCC GCCGGAGCTT ATGCGGCCGG AGCCGATCTG GGTCAAGCGG TCAAGCAGAC CACCAACTGG ACCGCGATCG GCATGTTTGC CACCTTCGTT ATTCTGACAC TGGGCATCAC CAAATGGGCG GCCTCCCGCA CCAAGAGCGC GTCTGACTTC TATACCGCCG GCGGTGGCAT TACCGGCTTT CAAAACGGAC TGGCGATTGC GGGCGACTAC ATGTCGGCCG CTTCGTTTCT GGGTATTTCG GGGCTGGTGT TTGCCAACGG CTTTGACGGC CTGATCTTCT CCATCGGCTG GCTGGTCGGC TGGCCGATCA TCACTTTCCT GATGGCCGAG CGCTTACGCA ACTTGGGCAA ATTTACTTTT GCTGACGTGG CCGGTTATCG CTTCAGTCAA ACGCCGATCC GCATCTTCGC TGCCTGCGGC TCGCTGGTGG TCGTGGCCTT TTACATGATC GCCCAGATGG TCGGCGCTGG CCAACTCATC AAGTTGCTAT TTGGACTGGA ATACCTGTAC GCTGAAATCC TGGTGGGCTC GATCATGATG ATGTACGTGC TGTTTGGCGG TATGACCGCC ACCACCTGGG TGCAAATCAT CAAGGCCTGC ATGCTGCTCG GTGGTGCCAC CTTCATGGCG TTCTCGGTGT TGCTTCAATT TGGCTTCTCG CCTGAAATGA TGTTTGAGAA AGCAATTGAA GTGCACTCAA AGAAAGACGC CATCATGGCC CCGGGTGGTC TGATCAAGGA CCCAATCTCG GCGATTTCGG TCGGCATGGC GTTGATGTTC GGCACCGCTG GCTTGCCCCA CATCCTGATG CGCTTCTTTA CGGTACCTAG CGCCAAAGAA GCACGCAAGT CAGTCGGCTG GGCAACCACC TGGATCGGTT ATTTCTACAT CCTGACCTTC ATCATCGGCT TTGGCGCTAT CACCAACCTG ATTCCCAACC CGATGGACTA CTTTGTTGGT GGTGACATCA GCAAAGGTCT GAACGGCGGC GGCAACATGG CGGCAGTGCA TCTGTCCAAG GCAGTCGGCG GCAACGTGTT CATGGGCTTT ATCTCGGCCG TGGCATTTGC CACCATTCTG GCCGTGGTCG CTGGCCTGAC GCTATCGGGT GCCTCGGCGG TTTCGCACGA CCTGTACGCG TCGGTCTGGA GAAAAGGTCG GGTTGACCAG GCAGATGAGT TGCGGGTCTC CAAAATCACC ACCGTGGCGT TGGGCATCAT CGCCGTCACG CTGGGCATCG CGTTTGAAAA AGAAAACGTG GCCTACATGG TGATGCTGGC GTTCGTGATT GCGGCCTCGG CTAACTTCCC AGTGCTGTTC ATGTCGGTTC TGTGGAAAGA CTGCACCACC AAAGGGGCAG TGGCCGGCGG TTTTGTCGGT CTGATCATGG CTGTGGTGTT GACGATTCTC TCGCCCAGTG TCTGGGTGGC CGTCATGCAC CATCCAGCGG GCTCGGCCTG GTTCCCGTAT GACTCGGCGG CGATCTTCTC GATCCCGGCC GCGTTCTTGA CCATCTGGCT GGTCTCTACG TTCGACCGCA GTGCACGTGC AGCTGTTGAT CGGGCTGGCT ATCCAGCGCA AGAGGTCCGA TCTGAGACCG GCATCGGATC GGCGTCAGCG TCAGGCCATT GA
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Protein sequence | MTRLSQFKGA IALFSLLALS AGAYAAGADL GQAVKQTTNW TAIGMFATFV ILTLGITKWA ASRTKSASDF YTAGGGITGF QNGLAIAGDY MSAASFLGIS GLVFANGFDG LIFSIGWLVG WPIITFLMAE RLRNLGKFTF ADVAGYRFSQ TPIRIFAACG SLVVVAFYMI AQMVGAGQLI KLLFGLEYLY AEILVGSIMM MYVLFGGMTA TTWVQIIKAC MLLGGATFMA FSVLLQFGFS PEMMFEKAIE VHSKKDAIMA PGGLIKDPIS AISVGMALMF GTAGLPHILM RFFTVPSAKE ARKSVGWATT WIGYFYILTF IIGFGAITNL IPNPMDYFVG GDISKGLNGG GNMAAVHLSK AVGGNVFMGF ISAVAFATIL AVVAGLTLSG ASAVSHDLYA SVWRKGRVDQ ADELRVSKIT TVALGIIAVT LGIAFEKENV AYMVMLAFVI AASANFPVLF MSVLWKDCTT KGAVAGGFVG LIMAVVLTIL SPSVWVAVMH HPAGSAWFPY DSAAIFSIPA AFLTIWLVST FDRSARAAVD RAGYPAQEVR SETGIGSASA SGH
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