| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rfer_3765 |
|---|
| Symbol | |
|---|
| ID | 3961114 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodoferax ferrireducens T118 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007908 |
|---|
| Strand | + |
|---|
| Start bp | 4201613 |
|---|
| End bp | 4202593 |
|---|
| Gene Length | 981 bp |
|---|
| Protein Length | 326 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 637918591 |
|---|
| Product | lytic transglycosylase, catalytic |
|---|
| Protein accession | YP_524996 |
|---|
| Protein GI | 89902525 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0741] Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACCGCAC CGCGCACGCC TGCAGGGGTC CGATGGACTG CGACCCTGCT CTGGCTGGCC
TGCGCGCATA CGGGCACAGC ACTGGCCCAA GCCAGCGCAC CGGCACTCGA CTCGGCGGCC
ATCGTAGACG ACACGCCGCC CGTACTGCGC AAGCTGCTGC AACAGGCCAG CGCACCGGAG
TCCGCCACCG ACACACCTGA AGGCGCCTGG CAAGCCGCCG TGCTGTATTG CCAGAGCGCG
CGCTGGGGCA GCGTCGAGGC GCAATACCGG CTCGGCATGC TCTACGCCTT TGGCCAGGGC
GTCCCCGAAA ACCGGGCCTT TGCCGCCGCC CCGTTCTCGC TGGCCGCGTC TCTGGGCCAC
GCCCAGGCCC ACCAGATGCT CGACACCATT GGGTTGACCT CGTCGGAACT ACCGGCCTGC
GTGAACCAGG AACAGCTGCC AGAAAAAGCA CCGCCCAGCC TCTTCAGCGG CCTGCCGCCC
GACTTGGCGG GCGGCAGCCG TCTGTCCATT GAACAGTTTC TACTGTCCCT GCCGCCGCAC
AAGCGCTGGC TCATCCCGCT GACCACCACC TTAAGCGCGT GGTATGCACT TGACCCGCGA
CTGGTGCTGT CGGTCATTGC CGTGGAATCC AACTTCAATA CAAGTGCCCA GTCGCCCAAA
GCCGCCATGG GCCTGATGCA GCTTATTCCC GACACCGCCA TACGCTTCAA TGTGCGCAAC
GCCTTTGACG CCACCCAAAA CCTGCGCGGC GGCATGCGCT ACCTGCGCTG GCTGCTGTCG
TACTACCGCG GCGACATCGC CTATGCCGCG GCCGCCTACA ACGCCGGCGA AGGCCGCGTG
GACCGCTACC GGGGCGTGCC CCCGTTCCCT GAAACCCGCG CCTATGTGCG CCGGGTCATT
GGCCTGTACG GCAGCGCGCG CCACGGCTTT GACGAAAACC TGGCCGCGGC TTCACCCTGG
CTGGTGGCCG GGGGGCGATG A
|
|---|
| Protein sequence | MTAPRTPAGV RWTATLLWLA CAHTGTALAQ ASAPALDSAA IVDDTPPVLR KLLQQASAPE
SATDTPEGAW QAAVLYCQSA RWGSVEAQYR LGMLYAFGQG VPENRAFAAA PFSLAASLGH
AQAHQMLDTI GLTSSELPAC VNQEQLPEKA PPSLFSGLPP DLAGGSRLSI EQFLLSLPPH
KRWLIPLTTT LSAWYALDPR LVLSVIAVES NFNTSAQSPK AAMGLMQLIP DTAIRFNVRN
AFDATQNLRG GMRYLRWLLS YYRGDIAYAA AAYNAGEGRV DRYRGVPPFP ETRAYVRRVI
GLYGSARHGF DENLAAASPW LVAGGR
|
|---|
| |