Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rfer_3446 |
Symbol | |
ID | 3960506 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodoferax ferrireducens T118 |
Kingdom | Bacteria |
Replicon accession | NC_007908 |
Strand | + |
Start bp | 3834954 |
End bp | 3836642 |
Gene Length | 1689 bp |
Protein Length | 562 aa |
Translation table | 11 |
GC content | 66% |
IMG OID | 637918266 |
Product | beta-lactamase-like |
Protein accession | YP_524686 |
Protein GI | 89902215 |
COG category | [R] General function prediction only |
COG ID | [COG0491] Zn-dependent hydrolases, including glyoxylases |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 22 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGCCACGCC CCTCCCAACT CCTGCACCCC GCGCGCCCAC CCGCGCCCAC CCGCCCGGCC GCGACCGTGC TGTTGCTGCG CGACACACCC GGTGGGCTCG AAGTGCTGAT GACACGCCGC TCCACAACAG CCAGTTTTGT GCCGGGCGCC TACGTCTTCC CCGGTGGCGG CGTGGACGCG CTCGACAGCG CCAGCCACGC CCAGGCCAGG CGCCGCGAGA CACAGAGCGA CCTGCACCTG ACGCAGGCGA TTGCCGCCAT CCGCGAGAGT TTTGAGGAGC TGGGGGTGCT GCTGGCGCGC CGCTCTGATG GCAGCCCCGC CAACCAGCAC GACATCGATG CGCTGGACCG AGGCGCGCCC TTTGTCGCTC AATGTCAAAG CCGATGCCTG ACGCTGGCGG CCGACGAGGT GTTTGTGCTG GCGCACTGGA TCACCGACCG CGACCTGCCG CGCCGCTTTG ACGTGCCGTT TCTGGTCGCC CGCATGCCCG AGGGGCAAAC GCCAGTCGCG GACGAGAGCG AGCAGTTCGA GCCGGTCTGG GTGCGCCCCG TTGACGCGCT GGCGCGGCAT GAGGCGGGCC AGTTCTTCAT CATCTACCCG ACCATCCGCA CACTGGAGCG GCTGCTGCAC TACGCCAGCG TGGACGCAGT GCTGCAAGCC TGCGCCGTCA ACGAGCGGCC GCTCTGGACT TGCTGCCCGC GCGCCGGTCT GCTGGGCGGG TGCGAGGTCC GCTTCATGGA GCATGAGCTC CCCTTTGGCG AACTGGCGCT GGTCTGCCCG GATGGGCAAG TCGTGCACCC GTTGGACTGG CAGACCGAGC AGCCGGTGGC ACTCTTGAAG AACGTGCTGC GCCTGACCGC GCCCAACCCT GGCGCCATGA CCGGGCCCGG CACCAACAGC TATCTGGTGG GCGACCCGGC GACCGGTTAC CTCGTGATCG ACCCCGGTCC GGCCGACCCG GATCACCTTG AAAAACTGTG GCGTGCGGCC GGCGGTGACA TCCGCATGAT TGTGTGCACC CATTCGCACC CGGACCACGC CCCGGGCGCC CTGCCCTTGC AGGCGCTGTG CCTGCAGCAC GGCCAGCCGC GGCCACCGAT TCTGGGTCTG CCCAGCGCGC CGACGGCCCG CGCCCACAGT GTATTCACGC CCAACAGAAC ACTATTGAAT AGTGAGCTGC TCACGCTTAT TCCACGGGGG TCAGAGGCTG ATTTGTCATA TATTTCAGGC CACACGCTCA AGGTGATTCA TACCCCCGGC CACGCCGCCA ACCACCTGTG CCTGGTCTTG CTGGAAGACC GTTTGCTGTT CAGCGGCGAC CACATCCTGA GCGGCAGCAC CACGGTGATT GATCCGCCCG ATGGCGACAT GCAGGCTTAT CTGGACTCCC TGGACGTGTT GAGCGCCGCC TGCGAAGAAC ACCAGCTCGA ATTCATCCTG CCCGCCCATG GCTACGTGAT TGGCGGTTTT GACGGCGAGG CAGCCGGGGC CATTACGCGT CTGAAAGCCC ATCGCCTGCA GCGCGAAGCC AAAATCGTGC AGGCGATGCA GGCACAACCG CAAGGCACAC TGGACGACTG GGTCGCGCAG GTCTACGACG ACGTCCCGCC GCGCATGTGG CCGGTGGCCA AGCGCTCGCT CATGGCCCAT GTGGCGCGCA TTGAAGTCAA TTTATCCCTG AATGACTGA
|
Protein sequence | MPRPSQLLHP ARPPAPTRPA ATVLLLRDTP GGLEVLMTRR STTASFVPGA YVFPGGGVDA LDSASHAQAR RRETQSDLHL TQAIAAIRES FEELGVLLAR RSDGSPANQH DIDALDRGAP FVAQCQSRCL TLAADEVFVL AHWITDRDLP RRFDVPFLVA RMPEGQTPVA DESEQFEPVW VRPVDALARH EAGQFFIIYP TIRTLERLLH YASVDAVLQA CAVNERPLWT CCPRAGLLGG CEVRFMEHEL PFGELALVCP DGQVVHPLDW QTEQPVALLK NVLRLTAPNP GAMTGPGTNS YLVGDPATGY LVIDPGPADP DHLEKLWRAA GGDIRMIVCT HSHPDHAPGA LPLQALCLQH GQPRPPILGL PSAPTARAHS VFTPNRTLLN SELLTLIPRG SEADLSYISG HTLKVIHTPG HAANHLCLVL LEDRLLFSGD HILSGSTTVI DPPDGDMQAY LDSLDVLSAA CEEHQLEFIL PAHGYVIGGF DGEAAGAITR LKAHRLQREA KIVQAMQAQP QGTLDDWVAQ VYDDVPPRMW PVAKRSLMAH VARIEVNLSL ND
|
| |