Gene Rfer_3442 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRfer_3442 
Symbol 
ID3960502 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodoferax ferrireducens T118 
KingdomBacteria 
Replicon accessionNC_007908 
Strand
Start bp3831381 
End bp3832394 
Gene Length1014 bp 
Protein Length337 aa 
Translation table11 
GC content67% 
IMG OID637918262 
Productphage integrase 
Protein accessionYP_524682 
Protein GI89902211 
COG category[L] Replication, recombination and repair 
COG ID[COG4973] Site-specific recombinase XerC 
TIGRFAM ID[TIGR02224] tyrosine recombinase XerC 


Plasmid Coverage information

Num covering plasmid clones16 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGACGCGCG CGCCCTCAGG GGCCAGCACA GCACACGAAG TGACCGCCGT GGGAACGGAT 
TTGGTTGAGC GCTACCTGGA GCACGTGCGG GTTGAAAAAC GCCTGGCGCA ACGCACGGTC
GAGTTGTATG CGCTGGACCT GCAGAAGCTG TCCCAGCAGG CCGCGCAGGC AGGGGTCGAA
CTGCTTCAGG TGCAAAACAG CCACATCCGG CGCTGGGTGG CCCAAATGAA TGCCGGCGGG
CGCAGTGGCC GCGGCATTGC CCTGATTCTG TCGGGCTGGC GCGGCTTCTA CGTCTGGTTG
GGGCGCGAAG GCCTGATCAG CAGCAACCCG GTGCAGGATG TGCGTGCGCC CAAGGCGGGC
AAGCCGCTGC CCAAAGCCCT GAGTGTGGAC CAGGCCGTCC AACTGGCCAG CTTTGCGAGC
GGCAGCAACG ACCCGTGGCT GGAGGCGCGC GACGCCGCCA TGGTGGAGCT GCTGTATGGC
GCAGGCCTGC GGGTGGGCGA GTTGACCGGA CTGGACACGG TGGCCAGTAG CAGCGCACGC
GGCTGGATCG ATTTGCAGGG TGGTGAAGCC CATGTGTTGG GCAAGGGCGG CAAACGGCGC
AGCGTGCCGG TGGGTGCCAA GGCGGTGCTT GCCATCACCC ACTGGCTGGC GCTACGCGAT
CAGGCGCTGG CGCAAGCCAA GCCGGGTCTG CAGGGGCCGG GCGGCAACGC CCAGGCCGCG
CTGTTTATGG GACGCAATGG CACCCGCTTG AGCGCCCAAT CGATCTGGCA GCGCCTGCGC
CAACGCAGCC TGCAGGCGGG CTTGACGACA CCGGTGCATC CCCACATGCT GCGCCACTCG
TTTGCCAGCC ACCTGTTGCA GTCCAGCAGC GATTTGCGCG CGGTGCAGGA GTTGCTGGGC
CACGCCAGCA TCACCACGAC CCAGGCCTAC ACCCGGCTCG ACTTCCAGCA TTTGGCCAAG
GCGTACGATG CGGCTCATCC GCGGGCGAAA ATCAAGGGGG CGACCCCAAA ATAG
 
Protein sequence
MTRAPSGAST AHEVTAVGTD LVERYLEHVR VEKRLAQRTV ELYALDLQKL SQQAAQAGVE 
LLQVQNSHIR RWVAQMNAGG RSGRGIALIL SGWRGFYVWL GREGLISSNP VQDVRAPKAG
KPLPKALSVD QAVQLASFAS GSNDPWLEAR DAAMVELLYG AGLRVGELTG LDTVASSSAR
GWIDLQGGEA HVLGKGGKRR SVPVGAKAVL AITHWLALRD QALAQAKPGL QGPGGNAQAA
LFMGRNGTRL SAQSIWQRLR QRSLQAGLTT PVHPHMLRHS FASHLLQSSS DLRAVQELLG
HASITTTQAY TRLDFQHLAK AYDAAHPRAK IKGATPK