| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rfer_3398 |
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| Symbol | |
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| ID | 3962182 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodoferax ferrireducens T118 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007908 |
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| Strand | - |
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| Start bp | 3782252 |
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| End bp | 3785860 |
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| Gene Length | 3609 bp |
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| Protein Length | 1202 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 637918218 |
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| Product | periplasmic sensor hybrid histidine kinase |
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| Protein accession | YP_524638 |
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| Protein GI | 89902167 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG0642] Signal transduction histidine kinase
[COG0745] Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.613847 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGCCGTGCC ATGGCGGCTG CCATGCCCCT GCCGTGGCAT GGAAACTGCA CCACAGCGGT
GTGACCTCAG ACACCCACCC CATCCCGCAC GCGGCCGCGT CGACACGCGC GCGGCCCGAG
GCGCTGCAGC GCATCACGCT GGTGCGGCGC GACTACAACG GCTGGGTGGC GAGCGAGACG
CTGGAAGACT ACGCCTTGCG TTTCACGCCG CAACGCTTTC GCAAGTGGTC CGAGTGGCGC
GTTGCGAACA CCGCTTTTGG CGCCGCCTCG TTCCTGATTC TGGAGGCTGT CGGCGCCACG
CTGCTGGTGC AATACGGTTT TACCAACGCG TTTTGGGCCA TTCTGGCCAC CGGCCTCATC
ATTTTTCTGG CCGGCCTGCC GATCAGCATT TACGCCGCCC GCTACGGGGT GGACATGGAC
CTGCTCACGC GCGGCGCCGG TTTTGGCTAC ATCGGCTCCA CGCTCACCTC GCTCATCTAC
GCCTCGTTCA CCTTCATCTT TTTTGCGCTG GAGGCGGCCG TCATGGCCTA TGCGCTGGAA
CTGGCGCTGG GCATTCCGCC CAGCTGGGGC TACCTGATTT GTGCGCTGGC GGTGATCCCG
CTGGTGACCC ATGGTGTTTC CACCATCAGC CGCCTGCAGG TCTGGACCCA GCCGGTGTGG
CTGCTGATGC TGGTGGTGCC CTTTGTTTAT GTGCTGATGC GCGACCCTGG TGCTTTCTCG
GGCGTGGTGC ACTACATCGG GGAAAGAGGA ACGGGTCCGG GGTTCAGTCT GCCCTTGTTT
GGTGCGGCGC TCACGGTCGG CATCGCCTTG ATGACGCAAA TGGGCGAACA GGCTGACTAC
CTGCGTTTCA TGCCTGCCAA GACGCCTGCC AATCGCCAAC GCTGGTGGTG CAGTGTGTTG
GTCGGCGGGC CGGGCTGGGT GATTTTGGGT GTGCTCAAGA TGCTGGGCGG GGCGCTCTTG
GCTTATCTGG CGATCAGCCA CGCGGTGCCG GTGGACCGCG CGGTGGACCC GAACCAGATG
TACCTGGCGG CGTATGAATA TGTGTTTCCC AATTACGGTT GGGCGGTGGC GGCCACGGCG
CTGTTCGTGG TGATCTCGCA GCTCAAGATC AATGTCACCA ACGCCTATGC CGGTTCGCTG
GCCTGGTCCA ATTTTTTCTC GCGCCTGACG CACAGCCACC CGGGCCGGGT GGTGTGGGTG
GTGTTCAACA CCCTGATTGC GTTCATGCTG ATGGAGATGA ATGTGTTTCA GGCGCTGGGT
GATGTGCTGG GCCTGTACTC CAACATCGCC ATCGCCTGGA TGATGGCGGT GGTGGCCGAC
CTGGTCATCA ACAAACCGCT GGGCCTGTCA CCGCCGGGCA TCGAGTTCAA ACGCGCGCAT
CTGTATGACA TCAACCCGGT GGGCGTCGGT TCCATGGCGC TCGCGTCCCT CTTGTCAGTC
ACGGCGCACC TGGGGCTGTT CGGCCCCATG GCGCAGGCCT TCTCGGCGCT GATTGCGCTG
GGCACGGCGT TCGTGGCCGC GCCGCTGATT GCATGGGCCA CCCAGGGCCG CTACTACATG
GCACGACAGA GCGCGGCGCC AGCGGGCGGG GCGGTGGGTG AGGGGGCCTG CAAGCGCTAC
CAGGTGCAGC GCTGCGTGAT CTGCGAACGC CAGTACGAAG GCCCCGACAT GGCGCATTGC
CCGGCCTACC AAGGCGCCAT CTGCTCGCTG TGTTGCACGC TGGACGCGCG CTGCGGCGAC
CTGTGCAAAC CCCACGCTTC CCTGTCCAGC CAATGGTCCG CCACCTTGCG CTGGCTGCTG
CCGCGGCGCA GCTGGTCGTA CCTGGACAAC GGCCTGGGCT ACTTTCTGCT GCTCATGGGG
GTGACCGTGC CGCTGCTGGC CAGTGTGTTC GGTCTGCTCT ATCACCAGGA GTTGCGCGCC
TTGACGCTGA GTGTGACTGA CATCGTGCAG TTGCAGGCGC CGCATGCCGC TTTGCGTTCG
GGGTTCTTCA AGGCCTATAT GGCGCTGCTG GTGATTGCCG GCCTGGTGGC CTGGTGGGTG
GTGCTGGCGC ACAAGAGCCG CCAGGTGGCG CAGGAAGAAT CCAACCGCCA GACCCATTTG
CTGATGTGCG AGATCGAGTC GCACCGCCAG ACCGACGAAG CGCTGCAAAC CGCCAGGCGC
GTGGCGGAGC AGGCGCGCCA TGCCGCCGAC CAGGCGAACC AGGCCAAGAG CCGCTACATC
AGCGCCATCA GCCACGAGCT GCGCACGCCG CTCAACAGCA TCCTGGGCTA TGCGCAGCTG
ATGGGCGAGG ACCCGTCCAT CCCGGTGCAC CGCCAGCAGG CCGTCAGCGT CATCAAGCGC
GGCGGCGAGC ACCTGCTCTC GCTGATCGAA GGCACACTCG ACATCGCGCA CATCGAGAGT
GGCAAGCTCA CGCTCAATCC CCGCCCCATG CACTTCGCCT CCCTGATGCA GGACATCGCC
AGCCTGTTTG AGCTCGAAGC GCAGGCCAAG GGCCTGAGCT TTCGTTATGT TGAAGGCGCC
GCCCTGCCGG CCGTGGTGCG GGCGGACGAA AAGCGGGTGC GTCAGATATT GATCAATCTG
CTGGGCAACG CCATCAAGTT CACCCAGAAA GGGCAGGTCA CGTTTGACAT CCGCTACGCG
CGCGAGATGG CCGTGATTGA CATCGAAGAC ACCGGGCCGG GCCTGTCCCC ACAAGAGCTC
AATCGCATCT TTGAGCCCTT TACCCGCGCC CATACGCCGG GCGCCACGGC ATCGGGCTCC
GGTCTGGGGC TGACCATCGC CAAGATGCTG ACCGACTTGA TGGGTGGTGA ACTCACCGTG
ACCAGCACGC CGGGCATGGG CTCGGTGTTT AAAGTGAAAC TGTTTTTGCC CGAGGTGCGC
GTGACCTCGG GCGCTGTCGG TGCCCTGTGC TTGTCCGGCT CCTCGGCCGA CATGCCAAGG
TCTTTGGCGA ACAAACCACG CCACGGTTAT GCCGGGCCAC GCCGACGCGT GCTGGTGGTG
GACAACGAAG AGGCCGACCG CGAGCTGCTC GTCAATCTGC TGCAGCCGCT CGGTTTTGAG
CTGCGCACCG CCGCCAGCGG CCATGACTGC CTGGACCTGC TGGCAGCGGG CTATCAGCCC
GACGTCATCT TCATGGACCT GGCCATGCCC GGCATTGACG GCTGGGAAAC CATTCGCCGT
CTGCGCGCAC TGGGCAGCAC CCAGGCGCAG ATTGCCATCG TGTCGGCCAA TGCTTTTGAC
AAGGGGCTGG ACAACGACGT CGACATGCCA AGTGAAGACT TCATCCTCAA GCCGGTGCGC
CACTCCGAGC TGCTGGACTG GCTGGCGCTG CGCTTGTCGC TCACCTGGCT GGACAGCGCC
GCACCGGTCG CAGAGCCTGC CCCTGCGCCC CTGCCAGTCG CCCTGGTTTA TCCCGAACGG
CCGCAGCTCG ATGCCTTGCG CGAGGTGGTG AGCCTGGGTT TTTTTCGCGG CATCATGAAC
AAGCTCGACG AAATCGAGGC CAGCCAGACG CAATGCACCG CCTTTGTCAC CGGGATGCGC
GGCCTGGCCC GGCAGTTCCA GTTTGAGACC ATGAGTCAGC AACTGAACCA GGTGATCCAT
GAAAACTAG
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| Protein sequence | MPCHGGCHAP AVAWKLHHSG VTSDTHPIPH AAASTRARPE ALQRITLVRR DYNGWVASET
LEDYALRFTP QRFRKWSEWR VANTAFGAAS FLILEAVGAT LLVQYGFTNA FWAILATGLI
IFLAGLPISI YAARYGVDMD LLTRGAGFGY IGSTLTSLIY ASFTFIFFAL EAAVMAYALE
LALGIPPSWG YLICALAVIP LVTHGVSTIS RLQVWTQPVW LLMLVVPFVY VLMRDPGAFS
GVVHYIGERG TGPGFSLPLF GAALTVGIAL MTQMGEQADY LRFMPAKTPA NRQRWWCSVL
VGGPGWVILG VLKMLGGALL AYLAISHAVP VDRAVDPNQM YLAAYEYVFP NYGWAVAATA
LFVVISQLKI NVTNAYAGSL AWSNFFSRLT HSHPGRVVWV VFNTLIAFML MEMNVFQALG
DVLGLYSNIA IAWMMAVVAD LVINKPLGLS PPGIEFKRAH LYDINPVGVG SMALASLLSV
TAHLGLFGPM AQAFSALIAL GTAFVAAPLI AWATQGRYYM ARQSAAPAGG AVGEGACKRY
QVQRCVICER QYEGPDMAHC PAYQGAICSL CCTLDARCGD LCKPHASLSS QWSATLRWLL
PRRSWSYLDN GLGYFLLLMG VTVPLLASVF GLLYHQELRA LTLSVTDIVQ LQAPHAALRS
GFFKAYMALL VIAGLVAWWV VLAHKSRQVA QEESNRQTHL LMCEIESHRQ TDEALQTARR
VAEQARHAAD QANQAKSRYI SAISHELRTP LNSILGYAQL MGEDPSIPVH RQQAVSVIKR
GGEHLLSLIE GTLDIAHIES GKLTLNPRPM HFASLMQDIA SLFELEAQAK GLSFRYVEGA
ALPAVVRADE KRVRQILINL LGNAIKFTQK GQVTFDIRYA REMAVIDIED TGPGLSPQEL
NRIFEPFTRA HTPGATASGS GLGLTIAKML TDLMGGELTV TSTPGMGSVF KVKLFLPEVR
VTSGAVGALC LSGSSADMPR SLANKPRHGY AGPRRRVLVV DNEEADRELL VNLLQPLGFE
LRTAASGHDC LDLLAAGYQP DVIFMDLAMP GIDGWETIRR LRALGSTQAQ IAIVSANAFD
KGLDNDVDMP SEDFILKPVR HSELLDWLAL RLSLTWLDSA APVAEPAPAP LPVALVYPER
PQLDALREVV SLGFFRGIMN KLDEIEASQT QCTAFVTGMR GLARQFQFET MSQQLNQVIH
EN
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