| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rfer_3370 |
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| Symbol | |
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| ID | 3960942 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodoferax ferrireducens T118 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007908 |
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| Strand | + |
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| Start bp | 3742233 |
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| End bp | 3744815 |
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| Gene Length | 2583 bp |
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| Protein Length | 860 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 637918190 |
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| Product | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) |
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| Protein accession | YP_524610 |
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| Protein GI | 89902139 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.742202 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTTGACGA CGCCGGCCTC GCACCACAAA CCGACGCAGC CCATGCGGGT GGCCGGGGTC
GTCTTCTTGC TGGCGGCCGT GCTCAGCGCC GGTCTGATCT GGCACCAGGA ACGCCAGCGC
AGGGAGCATG CGCGCGCCGA GGTTTACACG CTGGCACAAG ACCATGCCAA AGCAGCCCGG
GAACAGCTGG ATCGCGCCCT TTCCGCCATC TACGCGATGG CCGCGCTGGT CCAGCAAGGC
CGTGGTCAAG TGGATAACTT CGACGCCGTG GCCGCCAGGA TGCTGCCGTT TTACCCAGGT
GTGTCGGTGC TGATTCTCGC CCCGGGCGGC GTTATTCGTA ACGCGGTGCC GCTGGCCGGC
AATGAAAAAG CAATTGGCCT GGATTTGCTG AAAGACCCGG TGATGCAGCA GGAAGCGCAG
CGGGCGCGAT CGACCGGGCA ACTCACGCTG GCCGGTCCGC TTGAACTCAG GCAAGGCGGC
TTGGGCCTGG TGGCCAGATT ACCGATCTAC CTCGACAACG CTCAGGGCAC GCCAGAGTTC
TGGGGTTTCA CCAATGTGGT GATGCGTTTT CCGCAGACCC TGGAGTCGGC CCACTTGCCC
AGCCTGCTTC AGCGTGGGCT GGATTACAAA CTTTGGCGCG TCAACCCCGA AACAAGGCAG
ACTCAGATCA TCGCGGAATC ACAGTCTGCG CCGTTGATCG AGCCGGTCAT CCAAGGTTTT
GAAGTACCCA ACGGCGCCTG GTCGCTCAGT GTGGCGCCGC GACTGGGCTG GGGCGACCGG
GCAGGTTTGG CCGGCAAGAC TTTTATCGGA CTGTTGTTTT CATGGCTGCT GGCCTATCTG
GCCAAACTCC TGACGCGCCA ACGCGCCTAC AAGATCAATC TGGAGCAGCA GGTGACTGAA
CGCACTGCCG AAATCCAGGC GTCAGAGCGC CAACTCAGCG CCACGCTGGA CGCCATACCG
GATCTCTTAT TTGAGATGGA CTTGAACGGA CGTTACCTGC TGTGCCATTC GCCGCGCGCC
GCCGACCTGC TTGACGCACC GGTGCAGGCC CTGCTTGGCA AGACGGTGTC CGAGGTGCTG
CCCCCTGCGG CCGCCGAAGT GGTGCTGCAG GCCCTCAAGC AGGCGCATGA ACTCGGTCTG
GCCCACGGTC AGCAATTTGA ACTGGCATCG CCAGAGCAAG ACCGGTGGTT TGAGCTTTCA
GTGGCGCGCA AGGCGGTCAG CGCGGGCCAA GAGCCGCGCT TCATCGTGAT CTCGCGCGAG
ATCACCGAGC GCAAACAAGC CGAGAAAGAC ATCCAGAAAC TGGCCTATTT CGATGCGTTG
ACCAGCCTGC CCAATCGCAG CCTGCTCAAC GACCGCATCC GCCACGCCCT GAGCGAGGCC
GACCGACGCC AGGAATCACT GGCCTTGATG TTCCTGGACC TCGACCACTT CAAGAACATC
AATGACACGC TCGGGCACGG GGTGGGCGAC CAACTGCTGG TGGCACTGGC GGCGCGGATG
CAGTCGGTCG TGCGCGAACA AGACACGGTG GCGCGCCTGG GGGGTGATGA GTTCATCCTG
CTGCTGCCGG ACACCGGCTC CAAGGGCGCG GCGCGCGTCG CCCAGAAGTT GCTGCAAACC
ATCAGCCTGC CCGTGCAGAT CGGGCCGCAC GAACTGACGG TGACGCCCTC CATGGGCATT
GCCCAGTACC CGCGGGACGG CGACGATCTG GAGACACTGT CCAGACGCGC CGACATCGCC
ATGTACCGCG CCAAACAAAG CGGACGCAAC GGCTACCAGT TTTACACGAC CGAAATGCAG
CTCACGACCG ACCGCGCACT CCAGATTGAA AACGCCTTGC GCCGCGCACT GGAGCGCGAT
CAGTTGCGCC TGCACTACCA GCCCCAGTTG TCGCTCAGCA CGAACAGAAT CGTCGGCGTC
GAGGCGCTGC TGCGCTGGCA GCATCCGGAA CTGGGGCAGG TCGCACCGGC CGAATTCATT
GCGATTGCCG AAGCCAGCGG TCAGATTCAA GGCATCGGTG AATGGGTGCT GCGCACCGCT
GCCCAGCAAG CCAAACAATG GCGGGATCTG GGCCTGGCGC CGATGACGAT GTCGGTCAAC
CTCTCCGCCG TGCAGTTTCG TCACCCCGAT CTGCCCGAAC TGGTGGCCAG AATACTGGCC
GAGGCGCAAC TGCCGCCCCA ATTTCTTGAA CTGGAGTTGA CCGAAGGGGT GGCACTGCAT
GACCCGCTGG GCGCCATTGC GGTCATGGAG CACATGCACC AGCAGGGCGT GAAGATTTCA
ATCGATGACT TTGGCACCGG CTACTCGTCG CTGAGCTACC TCAAGCGTTT TCACGCCCAC
CAGCTCAAGA TCGACCAGTC GTTTGTACGC GACATCACCG ACGACCCGGA AGATCTGGCC
ATCGTCAATG CCATCATCAG CATGGCCCAC AGCCTGGGCA TGAACACCAT CGCCGAGGGG
GTTGAAACCC AGGCGCAATT GACGTTGTTA CGCGCGCAAG GCTGCGACGA GGTGCAGGGG
TATTTCTTTT GCAGACCCCA ACCACCAGAA GAACTGGTGG CTTTTCTGCG TGCGCACAGT
TGA
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| Protein sequence | MLTTPASHHK PTQPMRVAGV VFLLAAVLSA GLIWHQERQR REHARAEVYT LAQDHAKAAR
EQLDRALSAI YAMAALVQQG RGQVDNFDAV AARMLPFYPG VSVLILAPGG VIRNAVPLAG
NEKAIGLDLL KDPVMQQEAQ RARSTGQLTL AGPLELRQGG LGLVARLPIY LDNAQGTPEF
WGFTNVVMRF PQTLESAHLP SLLQRGLDYK LWRVNPETRQ TQIIAESQSA PLIEPVIQGF
EVPNGAWSLS VAPRLGWGDR AGLAGKTFIG LLFSWLLAYL AKLLTRQRAY KINLEQQVTE
RTAEIQASER QLSATLDAIP DLLFEMDLNG RYLLCHSPRA ADLLDAPVQA LLGKTVSEVL
PPAAAEVVLQ ALKQAHELGL AHGQQFELAS PEQDRWFELS VARKAVSAGQ EPRFIVISRE
ITERKQAEKD IQKLAYFDAL TSLPNRSLLN DRIRHALSEA DRRQESLALM FLDLDHFKNI
NDTLGHGVGD QLLVALAARM QSVVREQDTV ARLGGDEFIL LLPDTGSKGA ARVAQKLLQT
ISLPVQIGPH ELTVTPSMGI AQYPRDGDDL ETLSRRADIA MYRAKQSGRN GYQFYTTEMQ
LTTDRALQIE NALRRALERD QLRLHYQPQL SLSTNRIVGV EALLRWQHPE LGQVAPAEFI
AIAEASGQIQ GIGEWVLRTA AQQAKQWRDL GLAPMTMSVN LSAVQFRHPD LPELVARILA
EAQLPPQFLE LELTEGVALH DPLGAIAVME HMHQQGVKIS IDDFGTGYSS LSYLKRFHAH
QLKIDQSFVR DITDDPEDLA IVNAIISMAH SLGMNTIAEG VETQAQLTLL RAQGCDEVQG
YFFCRPQPPE ELVAFLRAHS
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