| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rfer_3347 |
|---|
| Symbol | |
|---|
| ID | 3963046 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodoferax ferrireducens T118 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007908 |
|---|
| Strand | + |
|---|
| Start bp | 3715565 |
|---|
| End bp | 3718510 |
|---|
| Gene Length | 2946 bp |
|---|
| Protein Length | 981 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 637918167 |
|---|
| Product | ribonucleotide-diphosphate reductase subunit alpha |
|---|
| Protein accession | YP_524587 |
|---|
| Protein GI | 89902116 |
|---|
| COG category | [F] Nucleotide transport and metabolism |
|---|
| COG ID | [COG0209] Ribonucleotide reductase, alpha subunit
[COG1328] Oxygen-sensitive ribonucleoside-triphosphate reductase |
|---|
| TIGRFAM ID | [TIGR02506] ribonucleoside-diphosphate reductase, alpha subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCAGACTG TTTCAAACCC ATCACCCGCC CGCCACTCCG ATGTTCCTGC CGTGCACCGT
ATGGACGGCA TCGACGACAC CGCGGCCCAT TCACTGAGCC AGTACCAGAT CATCCGCCGT
AACGGCGCGG TGGTGCCTTT TGAGCCCAAC AAGATCGCCG TTGCCATGAT GAAGGCTTTT
CTGGCGGTGC ATGGCACACA AGGTGCCGCC TCGGCCAGCG TGCGTGAATC GGTCGACGGC
TTGACGCAGG GTGTGATCCA CGCCCTGATG CGCTCGCGTC CGGCCGGGGG CACGTTTCAC
ATCGAGGATG TGCAGGACCA GGTGGAGCTG GGCTTGATGC GTGGTGGTCA TCATGAAGTG
GCTCGTGCCT ATGTTCTGTA TCGGGAAAAG CGCACGCAGG AGCGGGCCCA ACAATTGATC
GCCACAGCAG CCACAGCACC CCTGTTGCAT GTCGTGGACA AGGGTGGGCG CATCGTGCTT
GACCTGGCGC GCCTAAAAGG CATCATCGAG TCGGCCTGCG CCGGCTTGGG TGCCGACATC
AAGCCTGAGC CGATCCTGGC AGAGACGATG CGCAACCTGT ACGACGGCGT CCCGATGGAG
GAGGTGTACA AGGCCTCCAT CCTGGCTGCA CGCACGCTGA TCGAGAAGGA CCCCGATTAC
ACCTATGCCA CCGCCCGTTT GTTGTTTCAC ACTATCGCCA ACGAAGTCCT GGGCCGGGAT
GTGGTGCAGG CCGACATGGC ACAAGCCTAT GTCGATTACT TTCCCCAATT TATCAAAAAG
GGAATTGACC ACGAATTGCT CGACGAACGG CTGCAGCAGT TTGACCTGCA ACGACTGGGA
GCCGCGCTGA AGGCCGAACG CGATCTGAAG TTTGATTACC TGGGGCTGCA AACCCTGTAC
GACCGCTATT TTTTGCACGT GGGCAAGGCA CGCATTGAAT TGCCACAGGC TTTTTTCATG
CGCGTGGCCA TGGGTCTGTC GCTGGGCGAG ATCGACCGCG AAGCGCGCGC CATCGAGTTC
TACGAAGTCC TGTCTTCTTT CGATTTCATG TCCAGCACAC CCACACTGTT CAACAGTGGC
ACCTTGCGCT CGCAGTTGTC GAGCTGCTAT CTGACCACCG TGCCTGACGA TCTGGACGGT
ATTTATGAGT CCATCAAAGA AAACGCCCTG CTGTCCAAGT TCGCGGGCGG CCTGGGCAAC
GACTGGACGC GGGTGCGGGC CCTCGGTGCG CACATCAAGG GCACCAACGG CGAATCGCAA
GGCGTGGTTC CCTTCCTGAA AGTCGTCAAC GACACGGCGG TGGCGGTCAA TCAGGGCGGC
AAGCGCAAAG GGGCGGTTTG CACCTATCTG GAAACCTGGC ATCTCGACAT TGAAGAGTTC
CTGGAGTTGC GCAAAAACAC CGGCGATGAC CGCCGTCGCA CCCATGACAT GAACACGGCC
AACTGGGTGC CCGACCTGTT CATGCGTCGT GTCATGGAAA AAGGCCAATG GACCCTGTTC
TCGCCAAACA ATGTGCCGGA CCTGCACGAC AAGTTTGGCG CCGACTTCGA AAAGGCCTAC
GTCGCTTACG AAGAAAAAGC AGCACGCGGC GAGATCAGGC CAGCGCGCAC GGTGCAAGCG
GCGGACCTGT GGCGAAAAAT GCTCACCATG CTGTTTGAAA CCGGCCATCC CTGGATCACG
TTCAAGGACG CCTGCAATAT CCGCTCGCCG CAACAGCATG TCGGGGTGGT TCACTCCAGC
AACCTGTGCA CCGAAATCAC CCTCAATACC AGCGACACGG AGACGGCAGT CTGTAATCTG
GGCTCGGTCA ACTTGCTGCA ACACCTGAAG AACGCTCCCG CAGGCTCGGC CGACGGCGCC
AAAGTGCTCG ATCATGCCAA GCTGCAAAAG ACGATCACGA CCGCCATGCG CATGCTCGAC
AACGTGATCG ACATCAACTT CTACGCCGTG AAAAAGGCGC GTGACGCCAA TATGCGGCAT
CGGCCGGTGG GCTTGGGGGT CATGGCGTTC CAGGACAGTC TGTATGAGCT GCGCATCCCC
TACGCCAGCG ATGCGGCCGT GGCATTTGCG GATACCTCCA TGGAAGCCAT CTGCTATTAC
GCCTATTGGG CGTCCACCGA GCTGGCGCGT GAACGGGGTC AGTACACCAG TTACAAGGGG
TCTCTTTGGG ACCAGGGCAT TTTGCCGATC GACACGCTGG ACATGCTGGC GCGCGAACGT
GGTGGCTATG TGGAAGTGGA CCGCTCTTCC ACGCTGGATT GGGAAGCCCT GCGTAAAAAG
ATTGCCAAGG ACGGCATGCG CAACTCCAAC TGCACCGCCA TCGCACCGAC GGCCACCATC
TCCAACATCA TCGGTGTTGA CGCCTCCATC GAACCCTGCT TTGGCAATCT GTCCGTCAAG
TCCAACCTGT CGGGTGAATT CACCATCATC AACAGCTACC TGGTGCAGGA CCTCAAGCGC
CTGGGGCTTT GGGATGATGT CATGGTGATG GACCTCAAAC ACTTTGATGG TTCCTTGAAT
CCGATCGACC GGGTGCCGGC CGATGTCAAG GCCCTGTATG CCACCGCCTT TGAGATTGAA
ACACGCTGGC TGGTGGAAGC CGCCGCGCGT CGTCAAAAGT GGATTGACCA AGCCCAGTCT
CTCAACATTT ACATGGGCGG CGCCTCGGGC AAAAAGCTCG ATGACACGTA CAAGCTGGCC
TGGATTCGCG GCTTGAAGAC CACCTACTAT CTGCGCACCA TGTCGGCCAC CCATGCAGAG
AAATCAACCG TCACCGCCGG GCGCATGAAT GCAGTGTCTT CAGGCAGTGA GTCGGCGCAT
GGCGGTGCCA GCATGAGTGC ACTGGACGCT GCGGCGGCCA CGGCAAGAAT GCAGATGGCA
TCCGGCCCTG CAACCGACAT CAAATTTTGC GGCGTTGACG ATCCAACCTG CGAATCATGT
CAATGA
|
|---|
| Protein sequence | MQTVSNPSPA RHSDVPAVHR MDGIDDTAAH SLSQYQIIRR NGAVVPFEPN KIAVAMMKAF
LAVHGTQGAA SASVRESVDG LTQGVIHALM RSRPAGGTFH IEDVQDQVEL GLMRGGHHEV
ARAYVLYREK RTQERAQQLI ATAATAPLLH VVDKGGRIVL DLARLKGIIE SACAGLGADI
KPEPILAETM RNLYDGVPME EVYKASILAA RTLIEKDPDY TYATARLLFH TIANEVLGRD
VVQADMAQAY VDYFPQFIKK GIDHELLDER LQQFDLQRLG AALKAERDLK FDYLGLQTLY
DRYFLHVGKA RIELPQAFFM RVAMGLSLGE IDREARAIEF YEVLSSFDFM SSTPTLFNSG
TLRSQLSSCY LTTVPDDLDG IYESIKENAL LSKFAGGLGN DWTRVRALGA HIKGTNGESQ
GVVPFLKVVN DTAVAVNQGG KRKGAVCTYL ETWHLDIEEF LELRKNTGDD RRRTHDMNTA
NWVPDLFMRR VMEKGQWTLF SPNNVPDLHD KFGADFEKAY VAYEEKAARG EIRPARTVQA
ADLWRKMLTM LFETGHPWIT FKDACNIRSP QQHVGVVHSS NLCTEITLNT SDTETAVCNL
GSVNLLQHLK NAPAGSADGA KVLDHAKLQK TITTAMRMLD NVIDINFYAV KKARDANMRH
RPVGLGVMAF QDSLYELRIP YASDAAVAFA DTSMEAICYY AYWASTELAR ERGQYTSYKG
SLWDQGILPI DTLDMLARER GGYVEVDRSS TLDWEALRKK IAKDGMRNSN CTAIAPTATI
SNIIGVDASI EPCFGNLSVK SNLSGEFTII NSYLVQDLKR LGLWDDVMVM DLKHFDGSLN
PIDRVPADVK ALYATAFEIE TRWLVEAAAR RQKWIDQAQS LNIYMGGASG KKLDDTYKLA
WIRGLKTTYY LRTMSATHAE KSTVTAGRMN AVSSGSESAH GGASMSALDA AAATARMQMA
SGPATDIKFC GVDDPTCESC Q
|
|---|
| |