| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rfer_3171 |
|---|
| Symbol | |
|---|
| ID | 3962696 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodoferax ferrireducens T118 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007908 |
|---|
| Strand | - |
|---|
| Start bp | 3507369 |
|---|
| End bp | 3508460 |
|---|
| Gene Length | 1092 bp |
|---|
| Protein Length | 363 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | 637917990 |
|---|
| Product | inner-membrane translocator |
|---|
| Protein accession | YP_524411 |
|---|
| Protein GI | 89901940 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG4177] ABC-type branched-chain amino acid transport system, permease component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.471591 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAACAAC AACAGAAAAT CGTTGTCTTC CTGTTGGCAG CCGTCGGCCT GCTGATATTG
CCGCTGATTC TGCAGAGCTT TGGCAATGCC TGGGTGCGCA TTGCCGACAT GGCACTGCTC
TATGTGTTGC TGGCCCTGGG GCTCAACATT GTGGTCGGCT ATGCCGGATT GCTGGATCTG
GGTTACGTCG CCTTTTTTGC CATTGGCGCC TATATGTATG GCTTGCTGGC GTCGCCCCAC
CTGACCGAGA CTTTTGCCTG GATTGGCGCG ATGTTTCCGG ATGGTTTGCA TGCGCCGATA
TGGGTTGTGA TTCCAGCGGC GGCCGGTCTG GCGGGTTTTT TTGGCTTGCT GTTGGGTGCA
CCCACGCTGC GCCTGCGCGG CGACTACCTG GCCATTGTTA CCTTGGGGTT TGGCGAGATC
ATCCGGGTGT TCCTGAACAA CCTGGATCAT CCGGTCAACA TTACCAATGG CCCCAAGGGC
ATGAGCCAGA TTGATTCCCT GAGTTTCTTT GGGCTCAACC TGGGGCGAAC GCTCGACATC
GGCGGCTATG AGTTGAATTC TGTGTCCCTT TACTACTACC TGTTCCTGGC GCTGGTGTTG
TTCAGCGTGC TGATCTCGCA TCGGTTGCAG CTCTCGCGCG TGGGGCGGGC CTGGATGGCC
ATTCGTGAAG ATGAAATAGC CGCCAAGGCC ATGGGCATCA ATACCCGCAA CCTGAAATTG
CTGGCTTTCG GCATGGGCGC CACCTTTGGC GGCGTCTCAG GCACCATGTT TGCTTCTTTC
CAGGGCTTTA TTTCGCCTGA GTCTTTCAGT CTCATGGAGT CGGTCATGAT TGTGGCCATG
GTGGTGCTGG GCGGCATCGG GCATTTGCCA GGTGTCATTT TGGGCGCAGT GCTGCTCTCC
GCTCTGCCGG AGGTGTTGCG CTACGTCGCC GGGCCCTTGC AGGCCATGAC CGGTGGCCGG
CTGGATTCGT CGATTCTGCG CCAGCTCCTG ATTGCCCTGG CCATGATCAG CGTCATGCTG
GTGCGACCGC GCGGCTTGTG GCCGTCACCC GAGCACGGCA AATCCTTGCA GCAGAAGGGA
GAAGGCGCAT GA
|
|---|
| Protein sequence | MKQQQKIVVF LLAAVGLLIL PLILQSFGNA WVRIADMALL YVLLALGLNI VVGYAGLLDL
GYVAFFAIGA YMYGLLASPH LTETFAWIGA MFPDGLHAPI WVVIPAAAGL AGFFGLLLGA
PTLRLRGDYL AIVTLGFGEI IRVFLNNLDH PVNITNGPKG MSQIDSLSFF GLNLGRTLDI
GGYELNSVSL YYYLFLALVL FSVLISHRLQ LSRVGRAWMA IREDEIAAKA MGINTRNLKL
LAFGMGATFG GVSGTMFASF QGFISPESFS LMESVMIVAM VVLGGIGHLP GVILGAVLLS
ALPEVLRYVA GPLQAMTGGR LDSSILRQLL IALAMISVML VRPRGLWPSP EHGKSLQQKG
EGA
|
|---|
| |