Gene Rfer_2981 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRfer_2981 
Symbol 
ID3960612 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodoferax ferrireducens T118 
KingdomBacteria 
Replicon accessionNC_007908 
Strand
Start bp3287749 
End bp3288855 
Gene Length1107 bp 
Protein Length368 aa 
Translation table11 
GC content60% 
IMG OID637917801 
Productsignal transduction histidine kinase, nitrogen specific, NtrB 
Protein accessionYP_524223 
Protein GI89901752 
COG category[T] Signal transduction mechanisms 
COG ID[COG3852] Signal transduction histidine kinase, nitrogen specific 
TIGRFAM ID[TIGR00229] PAS domain S-box 


Plasmid Coverage information

Num covering plasmid clones17 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
TTGGACAAGC CCGATCACAC CCCGACTGCC CCTGACGTCG CGTCCAGCGC CGCGGCGACG 
CTGCGCTTCC AGTCGTTTGA CCTGCTGGCC ACGCTGGTGG CAGTGGTGCA CAGCAATGGC
ACCGTCCTCT TTGCCAATGC CGCGCTGGAG GATGCGCGCG GCATGTCACG GCGCGCGATT
GTGGGCTCAT GCCTGTCCGA CAGCTTTACG GAACCCGCCC GCCTCCAACA GGCCCTGCAA
AGCGCGGATG ACAATGAATT TGCCGCCTTG CGCTATGACA CCTGGCTCAA ACGCTTGAAC
CACGAGCCAC TGCCGGTGCA CGTGATCGTG ACCCGGACTG AAACAGAAGA TGAAATTGTG
GTCGAGTTGC TGCCACTGGA GCAACAAGCG CGTCAGGACC GGGAGGAACG CCTGGCTGAG
CAGGCGCAGG CCAACAAAGA GTTGATTCGC AATCTGGCGC ACGAGATCAA GAACCCGCTG
GGCGGTATTC GCGGCGCGGC GCAGTTGCTG GAGCTCGAAA TGGACTCGGC AGAACTCACC
GAATACACGC AGGTCATCAT CCATGAGGCG GATCGTCTGC AAACACTGGT GGACCGGCTG
CTGGCACCGC ACCGGCGCCC GCATCTGGTG GGGGATGTCA ACATCCACGA GGTCTGTGAA
CATGTGCGGC TGCTCCTGTC GGCCGAATTC CCCAAGGGCC TGCAGGTGGT GCGCGACTTT
GACACCTCGA TTCCCGAGTT TCGCGGTGAC CGCGAGCAGC TTATTCAGAC CGTACTCAAC
ATTGCGCACA ACGCCTGCCA GGCGCTGGCA GCGCAGATAG CGCAAGGCAG CGCCTGCCTG
ACTTTTCGCA CGCGAATTGC GCGCCAGATC ACTTTTGGTA AACAACGCTA CCGGTTGGCA
CTGGAATTGC ATGTGATTGA CAACGGGCCT GGTGTACCAG ACTCGATCAA AGACCGCATT
TTCTATCCGC TGGTGTCAGG GCGTGAAGGC GGTTCGGGGC TGGGACTGAC ATTGGCGCAA
ACCTTTGTCC AGCAACACCA CGGCTTGATC GAGTGCGACA GTGTGCCGGG CTGCACGGAT
TTCAAGATAT TGATTCCACT CCCTTAA
 
Protein sequence
MDKPDHTPTA PDVASSAAAT LRFQSFDLLA TLVAVVHSNG TVLFANAALE DARGMSRRAI 
VGSCLSDSFT EPARLQQALQ SADDNEFAAL RYDTWLKRLN HEPLPVHVIV TRTETEDEIV
VELLPLEQQA RQDREERLAE QAQANKELIR NLAHEIKNPL GGIRGAAQLL ELEMDSAELT
EYTQVIIHEA DRLQTLVDRL LAPHRRPHLV GDVNIHEVCE HVRLLLSAEF PKGLQVVRDF
DTSIPEFRGD REQLIQTVLN IAHNACQALA AQIAQGSACL TFRTRIARQI TFGKQRYRLA
LELHVIDNGP GVPDSIKDRI FYPLVSGREG GSGLGLTLAQ TFVQQHHGLI ECDSVPGCTD
FKILIPLP