| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rfer_2923 |
|---|
| Symbol | |
|---|
| ID | 3960440 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodoferax ferrireducens T118 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007908 |
|---|
| Strand | + |
|---|
| Start bp | 3233006 |
|---|
| End bp | 3235138 |
|---|
| Gene Length | 2133 bp |
|---|
| Protein Length | 710 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | 637917742 |
|---|
| Product | type II and III secretion system protein |
|---|
| Protein accession | YP_524165 |
|---|
| Protein GI | 89901694 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG4796] Type II secretory pathway, component HofQ |
|---|
| TIGRFAM ID | [TIGR02515] type IV pilus secretin (or competence protein) PilQ |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAACAATC AAAACTACTG GATGGCAAAG CGCATGTGGC AACAGGTTTT ACTGGCAGCT
TGGCTCATGT TGCTGGCACT TGGCGCGCAG GCCCAGAGTG CGATTGAGTC GGTGTCGGGA
TCGATTCAAG GCGGTGTGGA GGTCGTCAGA ATCGACCTGA CGCAGCCATT GGCGGCTGTC
CCAACCGGTT TTTCGATCCA GTCCCCCGCC AGAATTGCGC TTGATTTTCC GGGTGTTACC
AGCGCAATGG GACGCTCCAC CGTCGAGATC AATCAAGGCA ATTTGAGGTC GGTCAGTGTG
GTGCAGGCGG GGGATCGAAC CCGCGTGGTG CTGAATCTGA AACAAGCCAC CGCCTACAAG
GCCCAGTTGC AGGGCAAATC GTTGCTGGTG GTGCTGGATG CCGTGGCGCT CGCGGCACCG
GCAGCGTCTG CCACCCCGGT TTTTGCAGAA AACCGCAGCC GCGACACCCT GCCGCTGAAA
GACCTGGATT TCCGTCGCGG TGAAGAAGGC TCGGGCCGCG TTGTGGTGTC GCTGCCCAAC
AGCCAGGTCG GCGTCGACAT TCGCCAGCAA GGGGCAACGC TGGTGGTCGA GTTCATGAAA
TCCACCTTGC CCGAGGGCAT GCGACGGCGT CTGGATGTGA CTGATTTTGG TACCCCGATA
CAAACTGTGA CAACATTCGC AGTCGGTGAC CGCGTGCGCA TGGTGATTGA GCCCAAAGGA
CAATGGGTGC ACAGTGCCTA CCAAACTGAC GACCAGTTTG TGGTCGAAGT CAAGCCAGTG
AAAGCGGATA CCTCCAAATT GACGCAGGGA CCCGGCTACA GCGGACAAAA GCTGTCCCTC
AATTTCCAGA ACATTGAAGT GCGCTCGCTG TTGCAGGTGA TTGCCGACTT CACCAACTTC
AATATCATTA CCTCGGACTC GGTCAACGGT TCCGTCACCC TGCGTCTACA AGACGTACCC
TGGGATCAGG CGCTCGATAT CATCCTGCAA GCCAAGGGTC TGGGCATGCG CAAAACCGGC
AACGTGCTCT GGATTGCACC CAAAGATGAA ATCAACGCCA AGGAAAAGCT GGAGCTTGAA
TCGGTCGCCT CGCTGCAAAG TCTGGAGCCC TTGCGTACAC AGTCTTTCCA GCTGAATTAC
ACCAAGGCGG CAGACGTTGC CGCCCAGCTG ACCGCCACCG GCGGTGGCAC CGGCGCCAAC
AGCTCGCGCA TGTTGAGCCC ACGCGGCAGC ACCATTTCGG AGGCCCGCAC GAACCAGTTG
TTTGTGACCG ACATCCCCAG CAAACTCGAA CAAGTGCAGC AGCTGATCGC CAAACTCGAC
ATTCCGGTTC GCCAGGTGCT GATTGAAGCG CGCATTGTGG AGGCGTCGGA CACCTTTGGC
AAATCGCTCG GTGTCAAGTT GGGTGGTAAT GATTTGCGGG CACAAAGAGG CGGCGATGGC
GGCTATCAAC TCTCTGGCGA CAATCGTGTC GCCTTTGGCA CCAGCTATGG CAATGCGGTG
GCCAGCAGCG GCGCGGGCGG CGTCGTTGAC CTGACCAGTA ATTTTGTCAA TCTGCCTGCC
GTCGGTCAGG GTGGCTATAA CCCGGCGACT TTTGCACTGT CAATCTTCAG TTCGGCAGCC
AACCGTTTTC TCAATCTGGA ACTATCGGCA CTGGAAGCCG ATGGCAAAGG CAAGGTGGTC
TCAAGCCCGC GCGTGGTCAC CGCGGATCAG ATCAAGGCGC TGATTGAACA AGGCACGGAG
CTGCCCTATC AGGTAGCCTC TTCCAGTGGC GCAACCGCCA TTGCCTTTCG TAAAGCCAAT
TTGAAACTGG AAGTCACGCC GCAAATCACC CCCGAAGGCA ACATCATCCT GGATCTGGAT
GTGAACAAAG ACACCGTTGG CCAGTCCACC GCAGCTGGCT TCGCCATCAA TACCAAACAC
ATCAAGACCC AGGTGCTGGT TGAAAACGGC GGCACCGTGG TGATTGGCGG TATTTTCGAA
TTGACGGAAA GTGACAATGA AACCAAGGTG CCGTTCTTGG GCGATTTGCC CGGCGTTGGC
AACCTGTTCA AGACCCGCGG CAGGGTATCG AACAAGCAGG AAATGCTGGT CTTCATCACG
CCCAAGGTGG TGGCGGACCG GGCAGCGCGC TGA
|
|---|
| Protein sequence | MNNQNYWMAK RMWQQVLLAA WLMLLALGAQ AQSAIESVSG SIQGGVEVVR IDLTQPLAAV
PTGFSIQSPA RIALDFPGVT SAMGRSTVEI NQGNLRSVSV VQAGDRTRVV LNLKQATAYK
AQLQGKSLLV VLDAVALAAP AASATPVFAE NRSRDTLPLK DLDFRRGEEG SGRVVVSLPN
SQVGVDIRQQ GATLVVEFMK STLPEGMRRR LDVTDFGTPI QTVTTFAVGD RVRMVIEPKG
QWVHSAYQTD DQFVVEVKPV KADTSKLTQG PGYSGQKLSL NFQNIEVRSL LQVIADFTNF
NIITSDSVNG SVTLRLQDVP WDQALDIILQ AKGLGMRKTG NVLWIAPKDE INAKEKLELE
SVASLQSLEP LRTQSFQLNY TKAADVAAQL TATGGGTGAN SSRMLSPRGS TISEARTNQL
FVTDIPSKLE QVQQLIAKLD IPVRQVLIEA RIVEASDTFG KSLGVKLGGN DLRAQRGGDG
GYQLSGDNRV AFGTSYGNAV ASSGAGGVVD LTSNFVNLPA VGQGGYNPAT FALSIFSSAA
NRFLNLELSA LEADGKGKVV SSPRVVTADQ IKALIEQGTE LPYQVASSSG ATAIAFRKAN
LKLEVTPQIT PEGNIILDLD VNKDTVGQST AAGFAINTKH IKTQVLVENG GTVVIGGIFE
LTESDNETKV PFLGDLPGVG NLFKTRGRVS NKQEMLVFIT PKVVADRAAR
|
|---|
| |