| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rfer_2811 |
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| Symbol | putA |
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| ID | 3964261 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodoferax ferrireducens T118 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007908 |
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| Strand | - |
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| Start bp | 3108932 |
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| End bp | 3113017 |
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| Gene Length | 4086 bp |
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| Protein Length | 1361 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 637917629 |
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| Product | trifunctional transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase |
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| Protein accession | YP_524054 |
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| Protein GI | 89901583 |
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| COG category | [C] Energy production and conversion
[E] Amino acid transport and metabolism |
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| COG ID | [COG0506] Proline dehydrogenase
[COG4230] Delta 1-pyrroline-5-carboxylate dehydrogenase |
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| TIGRFAM ID | [TIGR01238] delta-1-pyrroline-5-carboxylate dehydrogenase (PutA C-terminal domain) |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCCACAG TCACGCTCGG AATCAAGGTC GATGAAACCC TGCGATCACG CATCAAGGAC
GCAGCCACAT TGCAGGGCCG AACCTCCCAC TGGCTGATCA AACAGGCGGT CTTGCAGTAT
GTGGAGGGCA TCGAGCGCGG CCATCGACCG CAAGTTGCAA CTGCAGGTGC AACCAGCTCG
GTCGAAGCCG TCGAAATTGA CGACGCTGAC GACTTGACGC TGCCAGCCAG TCCCGCACTC
TTTCCGCCAC AGCCCTTCCT TGATTGGGCA CAAAACGTGT TGCCACAGAC CGAGATGCGT
GCAGCCATCA CGGCCGCCTG GCACCGGCCT GAGCCTGAAT GCCTGCCGAT GCTGGTGCAA
CTGGCCCATG TGACCGACCC GGTACAGCGC GTGGCCATTG CGGAAGTCGG CACCCGCCTG
GTAGACGGCC TGCGCAGCAA CAAGGACAGC GGCGGCGTGG AAGCGCTGGT GCAGGAGTTT
TCGCTCTCCA GCCAGGAAGG CGTGGCGCTG ATGTGCATGG CCGAGGCGCT GTTGCGCATC
CCCGACAACG CCACCCGCGA CGCGCTGATT CGCGACAAGA TCAGCCACGG CGACTGGCAT
TCGCATCTGG GCAACTCGCC CTCGATGTTC GTCAACGCCG CCGTCTGGGG CCTGATGCTG
ACCGGCAAGC TCACCGCCAC CGCCAGCGAG AAGAGCATGG CGAGCGCGCT GACGCGGATG
ATCGGCAAGG GTGGTGAGCC GCTGATTCGC CAGGGCGTGC ACCGCGCCAT GAAGCTGATG
GGCGAGCAGT TTGTCACCGG GCAAACCATC TCCGAGGCGC TGGCCAACAG CCGCGCGCTG
GAGAAAAAGG GATTTCGTTA CTCCTACGAC ATGCTGGGCG AGGCCGCCAC CACCGAGCTT
GACGCCGAGC GCTACGTGGC CTCCTACGAG CAGTCGATCC GGGCCATCGG CATGGCGTCG
AACGGCCGCG GCATTTTTGA AGGCCCGGGC ATCTCGGTCA AGCTGTCGGC GCTGCACACG
CGCTACAGTC GCGCCCAACG CGACCGCGTC ATGGGTGAGC TGCTGCCGCG CCTGACCAAA
CTGGCCTTGC TGGCACGCCA GTACGACATT GGCATCAACA TTGATGCCGA AGAGTCTGAC
CGGCTGGAAC TCTCATTGGA CCTGCTGGAA AGCCTGTGTT TCGACCCCAG GCTCAAAGGC
TGGAACGGCA TCGGCTTCGT GGTGCAGGCC TACCTCAAGC GTTGCCCTTA TGTGATCGAC
CATGTGATCG ACCTGGCGCG CCGCAGCGGC CGCCGCTTGA TGATCCGCCT GGTGAAAGGC
GCCTACTGGG ACGCCGAGAT CAAACGCGCC CAGCTTGATG GTCTGGACGG CTACCCGGTC
TATACGCGCA AGGTGCATAC CGACGTTTCT TACCTGGCCT GCGCGCGCAA GCTGCTGGCC
GCGCCGGATG CGGTTTACCC CCAGTTCGCC ACCCACAACG CCCAGACTGT GGCTTCGATC
TACCAGATGG CCGGCAACAA TTACTACGCG GGCCAGTATG AATTCCAGTG CCTGCACGGC
ATGGGCGAGC CGCTCTATGA ACAGGTGACC GGCACAGTCG CTGACGGCAA GCTGGGGCGC
CCGTGCCGCA TTTACGCGCC GGTCGGCACG CACGAGACGC TGCTGGCCTA CCTGGTTCGG
CGTTTGCTTG AGAACGGTTC CAACTCCTCG TTTGTCAACC GCATCGGCGA CCCCAAGGTG
CGCGTGGAAG ACCTGGTGGC CGACCCAGTG CTGGAGGCGC AGGCGATCGA GCTTGAGGCG
GGCCAGCTCG GCGCGCCGCA CCCGAAGATT GCGCTGCCGC GCCAGCTGTT TGCGGCCCTT
GGCGCGCAGT CGCGCCTGAA CTCCTCGGGC TTGAACCTGG CCAACGAACA ACAGCTGGCC
TCGCTCGCCG CAGGTTTGCT GCGCAGCACA CAAGGCAACT ACGCGGCCGC TGCAACGGTG
GCTGGCATGG CGCACGTCAA CCCGCAAACG GCAGCCGCCG ATGGCTGGCA AGCGGTGTGC
AACCCGGCCG ACACGCGCGA CCAGGTCGGT TGGGTGCGCC CGGCGACAGT GGCAGAGGTG
GAATTGGCCG TCAACCGCGC GGCCCGCGCC ACGCAGATCT GGCAGGTCAC ACCGCCGCAG
GAGCGCGCTG CCTGCCTCAA GCGCGCGGCT GACCTGCTGG AGCAGCGCAC GCAAAGCATC
CTGGGCTTGA TCGTGCGCGA GGCGGGCAAG TCGCTGCCCA ACGCCATTTC AGAAATCCGC
GAGGCGGTGG ATTTTCTGCG CTATTACGCG GCGCAGGTGG AAGCCACCTT TGACAACCAG
ACGCAGCGGC CCTTGGGCGT GGTGCTGTGC ATCAGCCCGT GGAATTTCCC GTTGGCGATT
TTCGCCGGTC AAGTTGCTGC GGCGCTGGCC AGCGGCAACT GTGTGCTGGC CAAACCGGCG
GAACAAACGC CGCTGGTGGC CGACCTGATG GTGAAAATTC TGCACGAAGC CGGTGTGCCC
ATGGATGCCG TGCAACTGGT TCCCGGCACC GGTGAAGTCG TGGGCGCCGC GCTGGTGGCA
AACCGCCAGG TGGCGGGTGT CATGTTTACC GGCTCCACCG AGGTGGCGCG CCTGATCGCG
CAGACCTTGT CACAGCGCCT GAGCCGGCAG GGCCGCTGCA TCCCGCTGAT TGCCGAGACC
GGCGGCCAGA ATGCCATGGT GGTCGATTCG TCGGCACTGG CCGAGCAGGT GGTGGGCGAC
GTGCTGTCGT CGGCCTTCGA CTCGGCGGGC CAGCGCTGCT CGGCCTTGCG TCTGTTGTGC
ATTCAGGAAG ATGTGGCCGA GCGCGTGATC GGCATGATCA AGGACGCCAT GCGCGAGTGG
GTCATGGGCA ATCCAGACCG CATGCACACC GACGTGGGTC CGGTGATCGA CGAGGATGCG
CGCGCGCAGA TTGAGCAGCA TATTGAGCGT ATGCGCTCAG ACGGTCAGCC GGTCACACGC
ATGGCACGCG ATGAGAGCGG GGCCCAAGGT CATTTTGTGA TGCCCACCCT GATTGAAATC
GACCGCATTG AGCGCTTGCA GCGCGAAGTG TTCGGCCCGG TGCTGCATGT GCTGCGCTAC
CGACGTGACG ACCTCGACGC CGTGCTGGAC GCCATCAATG CCACCGGTTA CGGCCTGACC
TTCGGTGTGC ACAGCCGCAT CGATGAAACC ATTGCCCAGG TCACCCAGAA GGTGCAGGCT
GGCAATATTT ATGTCAACCG CAATGTGATC GGGGCCGTGG TCGGTGTGCA GCCTTTTGGC
GGCATGGGCT TGTCAGGCAC GGGGCCCAAA GCCGGTGGAC CGCTCTATGT GTACCGATTG
CTGCAGGAGG ACGATGCGCA GAGCAACCCG GGGTTGGCCG CGCTGGCGGC CTCGCCCGCC
AGTCGCGTGC TTGTGCCTGG CAGCTTTGAT CGTCAGCTGG CCGCGCATCC CGCGCTGCAG
GCCTTGCAGC GTCTGATGGC GAGCTTGCAA GGGCCAACGC TGGCGGCAGC GCAAGGTGCA
TTGGGCAGCT TTGACGCCGC TCAAGGCGCA GCCGCGTGCG AAGCCTACCG GGCCTGCAGT
GTGCTCGGCC AGGCCTTCAT GCTGCCGGGA CCCACGGGGG AGTCGAACCG TTACCAACTG
CTGCCGCGTG GCGCGGTCTG GGCCGTGCCG CAAACGGCGC TTGGGCTTTT ACACCAGCTG
GCAGCGGCCC TGGCCAGCGG CAACGCGTGC TGGATCGAAA CACCTGCCAG CGACAGTGTT
GTGGCGCGCA TGCTCAACAC GCTGCCCCCC GAGGTGCTGC GCTTTGTGCA GCAGCGCAGC
TTTGATCAAT TGCGCGGCGA GCCGCATTTG AGCGCCATGT TGTTTGAGGG CGATGGTGAT
GCCCTGCAGG CCTTGTCGCC CCGCGTGGCG CAGCAGCCCG GCGCCATCGT GCGTATTGAA
AGCTTGTCAC CGGCGCAGTT GGCAGCCGGT GCGTGCTACG ACCTGAGTGC ACTGATGCAT
GAGCAAAGCA TCAGCACCAA CACCGCAGCC GCAGGCGGCA ACGCGCAGCT CATGACGATG
GACTGA
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| Protein sequence | MATVTLGIKV DETLRSRIKD AATLQGRTSH WLIKQAVLQY VEGIERGHRP QVATAGATSS
VEAVEIDDAD DLTLPASPAL FPPQPFLDWA QNVLPQTEMR AAITAAWHRP EPECLPMLVQ
LAHVTDPVQR VAIAEVGTRL VDGLRSNKDS GGVEALVQEF SLSSQEGVAL MCMAEALLRI
PDNATRDALI RDKISHGDWH SHLGNSPSMF VNAAVWGLML TGKLTATASE KSMASALTRM
IGKGGEPLIR QGVHRAMKLM GEQFVTGQTI SEALANSRAL EKKGFRYSYD MLGEAATTEL
DAERYVASYE QSIRAIGMAS NGRGIFEGPG ISVKLSALHT RYSRAQRDRV MGELLPRLTK
LALLARQYDI GINIDAEESD RLELSLDLLE SLCFDPRLKG WNGIGFVVQA YLKRCPYVID
HVIDLARRSG RRLMIRLVKG AYWDAEIKRA QLDGLDGYPV YTRKVHTDVS YLACARKLLA
APDAVYPQFA THNAQTVASI YQMAGNNYYA GQYEFQCLHG MGEPLYEQVT GTVADGKLGR
PCRIYAPVGT HETLLAYLVR RLLENGSNSS FVNRIGDPKV RVEDLVADPV LEAQAIELEA
GQLGAPHPKI ALPRQLFAAL GAQSRLNSSG LNLANEQQLA SLAAGLLRST QGNYAAAATV
AGMAHVNPQT AAADGWQAVC NPADTRDQVG WVRPATVAEV ELAVNRAARA TQIWQVTPPQ
ERAACLKRAA DLLEQRTQSI LGLIVREAGK SLPNAISEIR EAVDFLRYYA AQVEATFDNQ
TQRPLGVVLC ISPWNFPLAI FAGQVAAALA SGNCVLAKPA EQTPLVADLM VKILHEAGVP
MDAVQLVPGT GEVVGAALVA NRQVAGVMFT GSTEVARLIA QTLSQRLSRQ GRCIPLIAET
GGQNAMVVDS SALAEQVVGD VLSSAFDSAG QRCSALRLLC IQEDVAERVI GMIKDAMREW
VMGNPDRMHT DVGPVIDEDA RAQIEQHIER MRSDGQPVTR MARDESGAQG HFVMPTLIEI
DRIERLQREV FGPVLHVLRY RRDDLDAVLD AINATGYGLT FGVHSRIDET IAQVTQKVQA
GNIYVNRNVI GAVVGVQPFG GMGLSGTGPK AGGPLYVYRL LQEDDAQSNP GLAALAASPA
SRVLVPGSFD RQLAAHPALQ ALQRLMASLQ GPTLAAAQGA LGSFDAAQGA AACEAYRACS
VLGQAFMLPG PTGESNRYQL LPRGAVWAVP QTALGLLHQL AAALASGNAC WIETPASDSV
VARMLNTLPP EVLRFVQQRS FDQLRGEPHL SAMLFEGDGD ALQALSPRVA QQPGAIVRIE
SLSPAQLAAG ACYDLSALMH EQSISTNTAA AGGNAQLMTM D
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