| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rfer_2766 |
|---|
| Symbol | |
|---|
| ID | 3961314 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodoferax ferrireducens T118 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007908 |
|---|
| Strand | - |
|---|
| Start bp | 3054172 |
|---|
| End bp | 3056325 |
|---|
| Gene Length | 2154 bp |
|---|
| Protein Length | 717 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 55% |
|---|
| IMG OID | 637917584 |
|---|
| Product | PAS/PAC sensor hybrid histidine kinase |
|---|
| Protein accession | YP_524009 |
|---|
| Protein GI | 89901538 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG2204] Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains
[COG4191] Signal transduction histidine kinase regulating C4-dicarboxylate transport system |
|---|
| TIGRFAM ID | [TIGR00229] PAS domain S-box |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.947572 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGGATTT TGTCCAGGCC CAGAATGCCC TCCGTGCTCA AGCCAAAACG CCTTCTGCGC
GGTCGCGCAA CAGGTCAAAA GCAAACAGTT CTGGCCAGGG GCTATTCCCT GGCAAAGATG
GTGGAGGATT TACGCAATTA CCAGGCTGAG CTGGAAATTC AAAATAAGGC GCTGCGGTAT
AGCCAAATCG CTGCCGAAGG CGCTTCGGAG CGGTTTCTTA CCCTTTTTTC AAACGTACCG
TTGGCGCTGC TGGTGGTGGA TGAAAATGGT CTGGTGCTCG AGAGCAATGC CATGGCTTTG
CGACTTTTTC GCCCCCTGGA GAGTGATCCG CCACTGAATT TCTTACTGCC GCTGGTGAAC
AGCGAGTATC TTGACAAGGT CGCACAGGCC TTTGTCAGCG CCAAAATGGT CGGAACCAAC
GAGACAACAG AAGTCGTTTT TTCGAGCGGC TTCAGCGGTG TTTTCACAGG TGACTTGCAT
ATTGCCCGGA TCGAGAATTT TCAGGATGAT CTGGCGCAAT TCATATGCGC GGTTATTGAC
CAAAGTCCTT TACTGGCTCA GCGTCAAGCC TTGCAGCTTA GTGCAGCAGA ACTGCAGCAG
CGCAATGAAG AACTTCAATT GAGCAAAAAC AGACTGGCCT CGATCATCAA TTCGTCACTC
GACGCCATTA TTTGTATCGA TCAGAATTAC CTCATTACCA TTTTTAATCC TACTGCGGCA
GCGTTGTTTC AGTGCCCGTC GTCGCAAGCC CTCGGCAGCC AACTGACACG CTTTCTGCCG
GACGCGGTGC AAACACTCAG CTACAACAAG CTCACCACGC ATGCGCAATT AGGTGAAATG
ACGGGCTTGA CGGCAAGCGG CAACAGCGTC TCCATTGAAG TCAGTGTGTC GTTTGAGCTG
CACCCGGAGG GTGATACCAC GACCATCTTC GCGCGCGACC TTACCAGCCG CAAGAAAATC
GAGGCGCACC GCAATGCTTT GGAGTCACAA CTGCGGGAGT CGCAAAAAAT GCAGGCGGTG
GGCACCATGG CGGGCGGGAT CGCGCATGAT TTCAACAACA TCATTGGTGC CATTCTGGGC
AATGTGGAAC TCGCCAAACA AGATGCTGGC GCAAGGTCGC CAGCGCTCGT CAGTCTTTCC
GAGATTGACA AGGCAGGGCG GCGAGCCCGC GATCTGGTGC GACAAATCTT GACATTCAGT
CGCAATGAAT CACCTCAGCG GATTCCAATT CAATTGGCTG ACGTGGTGCA GGAAACCGTG
CATTTGCTCA AGGTTACTCT TCCGCCCCTG GTCGACATGC AGGTGCGCAT TGACCCCAGC
ACCCCGTTGG TGCTGGCCGA TGCGACCCAA GTGGAACAAG CCCTACTCAA TCTGTGCACC
AATGCCATTC ATGCGATCGG CCCCCGGCGC GGGACGCTCA GTATCGAACT TGGGCACAAG
CTGACGGCTG ACCTGGGTCG GATAGAGCGT CGAGGCGGCG TACGTGGTCA GCACGTCAAA
TTGGTGGTTC GTGATACGGG CAGCGGTATC GATGCCCAGA CGCTGCAGCG CATTTTTGAA
CCCTTCTTCA CCACCAAACC CGTGGGCCAG GGCACTGGTT TGGGACTGGC GGTTGTTCAT
GGCATCATGC GCACTCACCA GGGCACTGTG GATGTGAAAA GCACGCCTGA CACCGGTAGT
GTGTTCACGC TTTATTTCCC GGTCGCCGAC CTTGCTGCCT TGCCCGAGAC CCCGCATGCT
GCAAAATTGT CGGAGCCCCA GTCGGTGCGG GGCGGAGGCA AGCGGGTCAT GTACGTTGAC
GACGATGAAG CGCTGGTCTT TTTGGTCCAA CGCGTGCTCA AACGCAAAGG ATTTGTGGTC
AGCACCTTCA CAGATCCCCG TTTGGCTGCT GCAGCCTTGC GAGCCCGCCC GCTGGACTTT
GATCTGTTGG TGACGGACTA CAACATGCCA GGTTACAGCG GCATAGAACT CTTGCGGGAA
ACCCGTTTGA TTCGACCTGA TCTCCCTGTT GCCTTGGCAT CGGGCTATGT GACCGCAGAG
ATCGAGCAAA GTGCCCTCAG TGCAGGCGCG CGGGCACTGA TCCACAAACC CAATGATGTG
GACGAGTTGT GTGAGACCGT CCAGCGACTT CTCCAAAGTG TCGATGCACG CTGA
|
|---|
| Protein sequence | MRILSRPRMP SVLKPKRLLR GRATGQKQTV LARGYSLAKM VEDLRNYQAE LEIQNKALRY
SQIAAEGASE RFLTLFSNVP LALLVVDENG LVLESNAMAL RLFRPLESDP PLNFLLPLVN
SEYLDKVAQA FVSAKMVGTN ETTEVVFSSG FSGVFTGDLH IARIENFQDD LAQFICAVID
QSPLLAQRQA LQLSAAELQQ RNEELQLSKN RLASIINSSL DAIICIDQNY LITIFNPTAA
ALFQCPSSQA LGSQLTRFLP DAVQTLSYNK LTTHAQLGEM TGLTASGNSV SIEVSVSFEL
HPEGDTTTIF ARDLTSRKKI EAHRNALESQ LRESQKMQAV GTMAGGIAHD FNNIIGAILG
NVELAKQDAG ARSPALVSLS EIDKAGRRAR DLVRQILTFS RNESPQRIPI QLADVVQETV
HLLKVTLPPL VDMQVRIDPS TPLVLADATQ VEQALLNLCT NAIHAIGPRR GTLSIELGHK
LTADLGRIER RGGVRGQHVK LVVRDTGSGI DAQTLQRIFE PFFTTKPVGQ GTGLGLAVVH
GIMRTHQGTV DVKSTPDTGS VFTLYFPVAD LAALPETPHA AKLSEPQSVR GGGKRVMYVD
DDEALVFLVQ RVLKRKGFVV STFTDPRLAA AALRARPLDF DLLVTDYNMP GYSGIELLRE
TRLIRPDLPV ALASGYVTAE IEQSALSAGA RALIHKPNDV DELCETVQRL LQSVDAR
|
|---|
| |