| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rfer_2666 |
|---|
| Symbol | |
|---|
| ID | 3960973 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodoferax ferrireducens T118 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007908 |
|---|
| Strand | + |
|---|
| Start bp | 2934843 |
|---|
| End bp | 2935976 |
|---|
| Gene Length | 1134 bp |
|---|
| Protein Length | 377 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 637917484 |
|---|
| Product | riboflavin biosynthesis protein RibD |
|---|
| Protein accession | YP_523913 |
|---|
| Protein GI | 89901442 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG0117] Pyrimidine deaminase
[COG1985] Pyrimidine reductase, riboflavin biosynthesis |
|---|
| TIGRFAM ID | [TIGR00227] riboflavin-specific deaminase C-terminal domain
[TIGR00326] riboflavin biosynthesis protein RibD |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGACAACAA GCCTGCCGCA ACCCATGCGC GACGCGCTCA ACCTGGCCTG CGCGGCATTG
CTCGTTGCCC CACCCAATCC GAGGGTAGGC TGCGTCATGA CGGACTGCCG CGAAAACACG
CTTGGGCAAG GACACACCCA GCGCACTGGT GGTGCGCACG CCGAAATCGT GGCCCTGCGC
GACGCAAAGG CTCGGGGTAA TTCGGTTGTC GGCGCCACCG CCTACGTCAC CCTGGAGCCC
TGCTCCCACC ACGGACGCAC CGGCCCGTGC TGCGACGCGC TCATTGCAGC AGGCATCAAA
AAAGTAGTGG CATCCATCGC CGACCCTAAT CCGCTGGTCT CAGGCCAAGG CTTCGAACGC
CTGCGCGCAG CGGGGGTGGA GGTCGAAGTG ATGCCTGCTG ACGACCCGCT GGCGATTGCG
TCGCGTGAAC TCAACATCGG CTTTTTCAGC CGCATGATCC GCAAGACACC CTGGGTGCGC
CTGAAGATGG CGGCCTCGCT GGATGGCAAA TCTGCGCTGG AAAATGGCGT CAGCCAGTGG
ATTACGTCGG AGGCTGCGCG TACGGACGGT CATGCCTGGC GCGCCCGCGC CTGCGCCGTA
CTCACCGGCA TCGGCACCGT GCTCACGGAC AACCCGCGCC TGGATGTGCG GCTGGTCGAC
ACGCCACGCC AACCTCATCT GGTGATCGTG GACAGCCGCC TTGAGACGCC ACTGGATGCA
GCGCTTTTTA CGCCGGGCCG CGTCATCTAC CTCTACGCTG CCGTCCAAAA CGAAGCAAAA
AAAGCAGCGT TGGAAACGCG TGGCGCCACG GTCATCTACG CGCCCGGACT CGAACCCGCA
ACGCGGAACA AGGTAGACCT CGCTGCCATG CTGCGTGACT TGGCGGCGCG TGAAATCAAT
GAGTTGCATG TGGAGGCCGG CCACAAGCTC AACGGCTCAT TCATTCGGGA AGGTCTGGTG
GATGAATATT TGGTCTACCT CGCACCCATG CTGATTGGGC TTGGCAGTGG CATGGCCAAC
TTTGGCCCCA TCACGCAACT CGAAGATGCA GTGAACCTGC GCTTTCACAG CATCGAGCCG
GTCGGTGATG ACCTGCGTAT TCTTGCCAGA CCGCCCGGCC GCGAAACGTT TTGA
|
|---|
| Protein sequence | MTTSLPQPMR DALNLACAAL LVAPPNPRVG CVMTDCRENT LGQGHTQRTG GAHAEIVALR
DAKARGNSVV GATAYVTLEP CSHHGRTGPC CDALIAAGIK KVVASIADPN PLVSGQGFER
LRAAGVEVEV MPADDPLAIA SRELNIGFFS RMIRKTPWVR LKMAASLDGK SALENGVSQW
ITSEAARTDG HAWRARACAV LTGIGTVLTD NPRLDVRLVD TPRQPHLVIV DSRLETPLDA
ALFTPGRVIY LYAAVQNEAK KAALETRGAT VIYAPGLEPA TRNKVDLAAM LRDLAAREIN
ELHVEAGHKL NGSFIREGLV DEYLVYLAPM LIGLGSGMAN FGPITQLEDA VNLRFHSIEP
VGDDLRILAR PPGRETF
|
|---|
| |