| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rfer_2637 |
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| Symbol | |
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| ID | 3960773 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodoferax ferrireducens T118 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007908 |
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| Strand | - |
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| Start bp | 2900093 |
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| End bp | 2902129 |
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| Gene Length | 2037 bp |
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| Protein Length | 678 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 637917455 |
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| Product | diguanylate cyclase with PAS/PAC sensor |
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| Protein accession | YP_523884 |
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| Protein GI | 89901413 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2199] FOG: GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.5465 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGACACCCG AATCCAATGA CGCTGTCGGC TCAACCGTGG GCGGCAAATC CGACTTCAGA
CTGTTGCGTT ATTTCGCCAC TGCCAGCCTG GTCGCCTTTG TGGTGGTTGC GGTCTTGCTG
GGCTACGTCT TTCGCACGCT GTCGGTGGAT GCCCTGATTG ACGGCTACCA GAGTGAACAC
ATCAACCACG CCAGGGTCAT TGCCAATGAG ATGTGGGAGG AGCACTTTGG CCCCTTGGTC
TTGTCGATGG CCGACAAGCC CGCCGCGCAG TTGCCGACGG CGCCACAGAT TCCCGTGCTG
CACCAAATGG TTCTCAAGCT TCTCAATGGC ACCCAGATTT ACAAAGTCAA GGTTTATGAC
TTGCGGGGCA GGACGGTTTA TTCAACCGAA CTCAATCAGA TTGGCGAGGA CAAGAGCGAT
AACGCGGGTG TGATGAACGG CTTGCGCGGT TTGAACAGTT CCGAACTCGT GCATCAAAAT
CAGATCAGCT CATTTGAGGG CGAACTGCAA GACCGTGACG TCATCGAGAG CTACATTCCG
CGCTACGACC CCGTGACGGG TCAAGTCAGC GGCGTGTTCG AAATCTACCG CGATGCCACC
TCGGTCCTGG CGGAGGTCGG TCAGCGGCAG TGGATCCTGG TCGCCGCTGT GATCACGCTG
CTGACGCTGC TTTACCTGGT GGTGTTCATC ATTGTGAAAA GAGCTCAGGA TCAAATCATT
GAGCAAAATC AGGAACGCAA AAGAGCCCAG CACGCGCTGG CTTTGAGTGA GGAACGCTGG
AAGTTTGCGC TTGAAGGCGC TGGCGACGGC GTATGGGACC GCAACTTGCA GACCGGTGAA
GTTGTGTTCT CCAAGCGCTA CAAGGAAATT TATGGCTTTG CCGCCGATGA GTTGGAGAAT
CACACCGAGG CTTGGGACGC GCGCGTCCAC CCTGATGATC TGGCCCGGAT AGAAGCCGAC
CGGGCGGCTT ATTTTGCGGG GGAAAAATCC AGCTACGCCA ATGAGCGACG GATGCAATGC
AAGGACGGCA GCTGGAAATG GATACTCTCG CGCGGCATGG TGGTGGCACG CGATGCGCAG
GGCCAGCCCT TGCGCATGAT TGGCACGCAC ACGGACATCA CTGCGCGTCA TGAGCGTGAG
GAAGCCTTGC GCCTGGCCTC TACCGTCATC CTGACCATGG ATGAGGCCGT GACCGTGACC
AATATGCGCA ATGAAATCAT CTCGGTCAAT CCGGCGTTCA CCGTGATTAC GGGCTACTTC
GCCAGTGAAG TCATTGGCAG AAACCCCAAA CTCATGGCGT CCGGCACTCA TTCCGCGACG
TTCTACCAGG ACATGTGGGC AAAGCTCGCC ACCACCGGCA ACTGGCATGG CGAAATCTGC
AATCGCCGCA AAAGCGGAAA ACTCTATGTG GAATGGCTTT CCATCAAGCA AGTGCGCGAT
GAGCAGGGCG TGCCCTCCCA CTATGTGGCG GTGTTCTCTG ACATTTCCGA ACGCAAGGCG
AGCGAGGTGC GCATGCAGCA CCTGGCGCAT TTCGACGTCC TCACCAATTT GCCCAATCGC
GCCCTGTTCT CCGACCGCTT GCGCCAGGCT ATCGCCAAGG CCAGGCGCGA CAAAACGCAG
CTGGCCTTGA TGTTCATGGA TCTTGACAGA TTCAAACCGG TCAATGACCA GCTCGGTCAT
CAGGTGGGCG ACTTGCTGCT CCAAGAAGTG GCACGGCGTT TGCTGGACTG CGTGCGGCGC
GAATCCGACA CCGTGGCGCG GATCGGTGGT GACGAATTTG TCGTGATGTT GCCAGATCTC
GAAACGGTGC AGGCGGCCAC GCTGGTCGCT GAAAAAATTC TTGCCGCATT GAACCTGGTC
TTTGAAATCG GCGAGCATCG GATCCATATT TCATCGAGCA TCGGCATTGC CATTTTTCCC
GAGCATGGTC AAGACGAAAA TCATTTGCTT AAAAGCGCCG ATGCAGCCAT GTACCTGGCT
AAAGAAAATG GCCGCAACCG GGTCCAGGTG GCGGCAGCTG CGTCGAGCCC GGTCTAG
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| Protein sequence | MTPESNDAVG STVGGKSDFR LLRYFATASL VAFVVVAVLL GYVFRTLSVD ALIDGYQSEH
INHARVIANE MWEEHFGPLV LSMADKPAAQ LPTAPQIPVL HQMVLKLLNG TQIYKVKVYD
LRGRTVYSTE LNQIGEDKSD NAGVMNGLRG LNSSELVHQN QISSFEGELQ DRDVIESYIP
RYDPVTGQVS GVFEIYRDAT SVLAEVGQRQ WILVAAVITL LTLLYLVVFI IVKRAQDQII
EQNQERKRAQ HALALSEERW KFALEGAGDG VWDRNLQTGE VVFSKRYKEI YGFAADELEN
HTEAWDARVH PDDLARIEAD RAAYFAGEKS SYANERRMQC KDGSWKWILS RGMVVARDAQ
GQPLRMIGTH TDITARHERE EALRLASTVI LTMDEAVTVT NMRNEIISVN PAFTVITGYF
ASEVIGRNPK LMASGTHSAT FYQDMWAKLA TTGNWHGEIC NRRKSGKLYV EWLSIKQVRD
EQGVPSHYVA VFSDISERKA SEVRMQHLAH FDVLTNLPNR ALFSDRLRQA IAKARRDKTQ
LALMFMDLDR FKPVNDQLGH QVGDLLLQEV ARRLLDCVRR ESDTVARIGG DEFVVMLPDL
ETVQAATLVA EKILAALNLV FEIGEHRIHI SSSIGIAIFP EHGQDENHLL KSADAAMYLA
KENGRNRVQV AAAASSPV
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