| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rfer_2629 |
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| Symbol | |
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| ID | 3963407 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodoferax ferrireducens T118 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007908 |
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| Strand | - |
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| Start bp | 2892004 |
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| End bp | 2894412 |
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| Gene Length | 2409 bp |
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| Protein Length | 802 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 637917447 |
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| Product | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) |
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| Protein accession | YP_523876 |
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| Protein GI | 89901405 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.537501 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGAATCCGG CGGCCTGGGG CCTCTTGATT GATGGTTTGA TCGAGGCCGT CTGGCTGGTT
GATCCGGTGA GTTTGCGCAT CCTCGCGGTC AATCACGCAG CGGCCGACTT GTTGGGTTTG
AAGGCAGAGG ATTTGGTGGG CAAGCCCGCT ATAGAGTTGA CTGTTACGCC AGAAGACCAG
TTCTTTTGGG AGGACATCGC CGCTGGTTTG GTTGATGGCA TTCACTCGGA AACCCTGTTG
CGTGGTGCCG ATGGCATGGC CGTTCCGGTG GAACGCCGTG TCAGCCGGGT TTGGCCCGAA
ACGGGGCGCG CGGTGTATGT GGTGGGCATT CGCGATCTGC GCCAGCAGCG CCGCACCGAA
GATGAACTTG AAAGCTTGGT GGCAGAGCTG CGGGCCACAC TGGAATCAAC TGCCGATGGC
ATTCTGGTCA CCGATCGCAG TGGCGACATC CGCAACTACA ACCGGCATTT TGCCGCCATG
TGGGATGTGC CCGAAGAGCT GCTTTTGAAT CCCAATGACC GGGCCTTGCA TGGCCATCTG
GCCTCGCGGG TGCTCGACGC TGCGGCATAC GAGACGCGCC TGCGGGCGAT TGCTGAGAGT
CCCTTGCTGG AAACCACTGA TGTGTTGATC CTGATCACTG GGCGTCTACT GGAGCGGGTG
TCACGGCCGC AATTCAGCAG AGGTCAAGCG ACCGGTCGGG TGTTCTCGTT TCGGGACATC
ACGCAAAGTG TTGATGCCCA GTCCAGACTG CGTCTGGCGG CCAAAGTGTT TGAGTCGAGC
GTGGATGCCA TCTTCATCAC GGATCCGGAT CTGACGATCC TGGCTGTCAA TCCGGTTTGT
GAGCGTTTGA CAGACACTTC TCAAGCTCAA TTGCTGGGGG AATCCGCCAA GAGTCTATTC
CAGGATCCGT GTGACCCTGA ACTGATGGTT CGTGTGGAAC AGGTGCTGCG CGATGAGGGC
TTCTGGCGCG GGCAGGTCTG GCTTGACCGT GCCGGTCGTT CTGCTTGTGC CGTTCATCTG
TCATGGGTTT TATTGCGTGA CGAGGACGGC GCTGTCTTGC ACACCATTTG CTTCTTCAAG
GACCTGACCG AAGAATTGGC GGCCCAAAAA CGCATTGAGC AACTGGCTTA CAGCGACGCC
CTGACAGGTC TGCCCAATAA ATTGTTGTTG TCACAGCGAG TCGGCTTTGC CTTGCGCATG
GCCGAGCGCC ACGGCTCGCA GTTTGGTGTT TTCTTTCTGG ATCTGGATCA CTTCAAGAAT
ATCAATGACT CGATGGGGCA TGTGTTTGGC GACCGGGTTC TGGTCGAAGT GGCGGAGCGC
ATCAAACGTT GTTTGCGCGA CGCCGACACC TTGTGTCGGC TCGGTGGCGA CGACTTTGTC
ATTTTTGTGC AGGAAATTGA CGCTCGTGGC GCTGAAATGC TGGCACAGCG CATTCTGGAC
CTGATGGCGC AGGCTTTTCT GATCGAGGAA ACCAGTTTTT CGGTTGGGTG CAGTATTGGT
ATCGCACTGT ATCCGGCCGA TGGCCGCTCG CTCGATGAGT TGATCAAGTG CGCTGATACG
GCGATGTATC TGGTCAAGGA GCGCGGTCGA GGCAGTTTCC GTTTTTATCA ACCGCAGATG
AATGTTGATT TGCTGTCGCG CATGAAAATG GACCATGCCA TGCGCCGGGC CATGGAGCAG
GGCATGTTCC GGCTGCACTA CCAGCCGCAA ATTTCCCTGG CCAACGGCCA GTTGGTGGGC
GTGGAGGCGC TGATTCGCTG GTTGGATGGC GAACTGGGCA ATGTGTCGCC CGTGTTGTTC
ATTCCCCTGG CAGAGGAATC GGGCTTCATC ATCACGATTG GCACCTGGGT GCTTAAAGAG
GCGGTGCGGC AAGCGGTGCT CTGGCAGAAC GCTGGCACGC CGGTCACGGT GTCGGTCAAC
GTATCGGCAC TGCAGTTTCA GCAGACCGAT TTTGTGGAGA TTGTGGCGAA CGTGCTGAAG
GATTCCGGAT TGGCACCGTA TCTTCTTGAG CTCGAATTGA CAGAGACCAT TTTGGTCAGG
GATGCCAATG AGACCTTGAA CCGTTTGCAT GCACTGGCGG CCCTCGGAGT CGCCCTGTCG
ATCGATGACT TTGGCACCGG TTATTCGAGC TTGGCTTACC TGAAAAAATT TCCCATCTCC
AAGCTCAAGA TTGATCGCTC TTTTGTCATG GGCCTGCCCG ACGACGAAGG TGACCGCGCC
ATCGTGAGTG CGACTATCGG CATGGCGCGC GGACTCAAAT TGAAAGTGGT CGCAGAGGGG
GTCGAAACCA TCGCGCAACG AGACTACCTG GCCGGGCTCA ATTGCGAATC TTTTCAAGGT
TTTCTGTGTT CCCCCGGACT GCCTGCCGAG GAGTTTGAGC GACTGATGGC GTCATTTCCG
CGCGATTAG
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| Protein sequence | MNPAAWGLLI DGLIEAVWLV DPVSLRILAV NHAAADLLGL KAEDLVGKPA IELTVTPEDQ
FFWEDIAAGL VDGIHSETLL RGADGMAVPV ERRVSRVWPE TGRAVYVVGI RDLRQQRRTE
DELESLVAEL RATLESTADG ILVTDRSGDI RNYNRHFAAM WDVPEELLLN PNDRALHGHL
ASRVLDAAAY ETRLRAIAES PLLETTDVLI LITGRLLERV SRPQFSRGQA TGRVFSFRDI
TQSVDAQSRL RLAAKVFESS VDAIFITDPD LTILAVNPVC ERLTDTSQAQ LLGESAKSLF
QDPCDPELMV RVEQVLRDEG FWRGQVWLDR AGRSACAVHL SWVLLRDEDG AVLHTICFFK
DLTEELAAQK RIEQLAYSDA LTGLPNKLLL SQRVGFALRM AERHGSQFGV FFLDLDHFKN
INDSMGHVFG DRVLVEVAER IKRCLRDADT LCRLGGDDFV IFVQEIDARG AEMLAQRILD
LMAQAFLIEE TSFSVGCSIG IALYPADGRS LDELIKCADT AMYLVKERGR GSFRFYQPQM
NVDLLSRMKM DHAMRRAMEQ GMFRLHYQPQ ISLANGQLVG VEALIRWLDG ELGNVSPVLF
IPLAEESGFI ITIGTWVLKE AVRQAVLWQN AGTPVTVSVN VSALQFQQTD FVEIVANVLK
DSGLAPYLLE LELTETILVR DANETLNRLH ALAALGVALS IDDFGTGYSS LAYLKKFPIS
KLKIDRSFVM GLPDDEGDRA IVSATIGMAR GLKLKVVAEG VETIAQRDYL AGLNCESFQG
FLCSPGLPAE EFERLMASFP RD
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