| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rfer_2487 |
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| Symbol | |
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| ID | 3962980 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodoferax ferrireducens T118 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007908 |
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| Strand | + |
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| Start bp | 2747108 |
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| End bp | 2749315 |
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| Gene Length | 2208 bp |
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| Protein Length | 735 aa |
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| Translation table | 11 |
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| GC content | 56% |
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| IMG OID | 637917306 |
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| Product | response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) |
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| Protein accession | YP_523735 |
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| Protein GI | 89901264 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGGGCTG AAGTCGATGT CATCGCGGGT GGCGAATGGA CGCCATCAGC GGTCAGTTTC
GCAAGCCACG GATGGTCAGC ACCCGCCCCT GCACAATTGC CTGCGCAGGT GCTGCTGGTT
GACGACGAAC CGAGAATGCT CAGCAGCCTG GGCGAACTGC TCAAGGATCG GGGCTTTGTC
CTGACCAGCG CAGCCAACGG CGGTGAAGCG ATCCGGTATC TCGGCCAACA ACCCTTTGAC
TTGGTGATTC TGGACCTGCG CCTGCCCGAT ATCAGCGGCC ACGACATCAT GGATTTCATG
AACTCCCAGC AAGCCGATGC CAACATCATT GTGACCAGCG GCGACCGCGG AATTGACGCA
GCAATTGGTG CGCTCAAACG AGGCGCCTAC GATTACCTGC GCAAGCCCTA CAGCCCGGAA
GAACTGCGCA AGACGGTGGA CAACGCCTTG AAGCAACGCC GCTTGCAGGC CGAAAATCGG
CATATCGCCT GGCAACTTGA AAGCTCCGAA AGAAAATACC GTTATCTGGT CGACAGTTCG
CCCGACATCA TCTACACGCT TGATCATGAA GGCCGCTTTA CCTTTGTCAA CGACCGGGTG
CAGCAGTTGT TGGGTTTCAG CCGCGAGGAG CTGATTGGCG AGCACTATTC TGTGCTCATT
CAAGAAGACG ATGTACTGCG CGCAAATTAT GTTTTCAACG AGGGACGAGG CGACTATCGC
CTGTCTCGCA ACGTCGAGCT GCGGCTCAAG TCCCGCCATG CCAAAGGTGA AGTGCGCACC
TTCACCCATG AATTGATGAC GATTTCGTTC AACGCCAGCG ACACGTCACA AGAACCTGAT
TCGACCCAGC AAGAACTGTT TGGCACCTAC GGCGTAGCCC GTGACATTAC CGATCGCAAG
CGGGCTGACG AACTGATTAC CTATCAGGCC TACCACGACA TCCTGACGGA TCTGCCCAAC
CGGGTGCTGT TCAAAGACCG CTTGGGCCTG GCGGTGCTGC AGGCCAAGCG AAATGACGCC
AGTCTGGCCC TGATGTTTAT CGATCTTGAT CGCTTCAAGC TGGTTAACGA CACACTGGGT
CACGTCATAG GCGACAAGTT GCTGCAACAA GCGGCCATTC GCCTCAAAGC CTGCCTGCGC
AGTGGCGACA CACTGGCGCG GCTGGGGGGG GATGAGTTTA CGGCGGTCTT GCCAGAGTTG
AGTGATCGAC AAGACGCTGT GCTGATCGCA GAAAAGTTTC TGGAATGTCT GCGCCAGCCG
TTCCAGCTCG CCGGACAGTC GGTCCACATC TCCGCCAGCA TCGGTATCGC CATTTATCCT
GGCGACGGTG AATCGACCGA TGAACTGATC AGAAACTCCG ATATCGCGAT GTACCACATG
AAGGCCGAGG GCAAGAACGG CCACTCGTTT TTCGACCGTT CAATGCTGGA TGCGTCCTGC
CAGAAGATTG AGCTAGAACA CAGTCTGCGA CTGGCACTGG AACGGGGCGA GCTGGAGATG
TACTACCAGC CCCAAGTGGA TGTCAGGACA CAAAAAATTG TGGGGGCCGA GGCGCTGATG
CGCTGGAACC ATCCTGAACG CGGATTCCTG GGTGCCGGCG ATTTCTTGCC GTTTGCCGAG
GAAAATGGTT TGATTATTCC CATCACCGAC TGGATGCTGG AGGCCATCTG CCTCGACCTG
CTGGACTGGA ATGCGGCCGG CGGCGAGCCG GTGCGGCTGT CACTCAATCT TTCTCCCCAA
TACCTTGATC GCGGAGACTT CTTTGACAAG CTCAAGAATG CGCTGACCCT GCACCATATC
AACGCGTCCC AGATTGAGGT CGAAGTGACC GAAAACATTT GTATCCACAA TCCGCAGACG
GCCATTGAAC AACTCAACAA GCTCTGTCAA CTCGGGGTCA GCGTGGCCAT CGACGACTTC
GGAACCGGCT ATTCCTCCTT ATCCTATTTA CATCGATTCC CGATTCATAC CATCAAGATC
GATCGTTCGT TTGTGATGAA AATTCAGAAC GACAATTCGC AATGTCCGGT GGTGCTCGCC
ATCATCTCGA TCGCGAAAGG CTTGAGTCTG AACCTGGTCG CGGAGGGTGT TGAGACCCAG
GTTCAGGAAC GCTATCTGGA GCGTTCCGGC TGTAACACGA TGCAGGGCTA CCTGTATCAC
AAGCCCTTGT CGCAGAAGAA AATGCTTGCA TTGCTGCGCG TGGCCTGA
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| Protein sequence | MRAEVDVIAG GEWTPSAVSF ASHGWSAPAP AQLPAQVLLV DDEPRMLSSL GELLKDRGFV
LTSAANGGEA IRYLGQQPFD LVILDLRLPD ISGHDIMDFM NSQQADANII VTSGDRGIDA
AIGALKRGAY DYLRKPYSPE ELRKTVDNAL KQRRLQAENR HIAWQLESSE RKYRYLVDSS
PDIIYTLDHE GRFTFVNDRV QQLLGFSREE LIGEHYSVLI QEDDVLRANY VFNEGRGDYR
LSRNVELRLK SRHAKGEVRT FTHELMTISF NASDTSQEPD STQQELFGTY GVARDITDRK
RADELITYQA YHDILTDLPN RVLFKDRLGL AVLQAKRNDA SLALMFIDLD RFKLVNDTLG
HVIGDKLLQQ AAIRLKACLR SGDTLARLGG DEFTAVLPEL SDRQDAVLIA EKFLECLRQP
FQLAGQSVHI SASIGIAIYP GDGESTDELI RNSDIAMYHM KAEGKNGHSF FDRSMLDASC
QKIELEHSLR LALERGELEM YYQPQVDVRT QKIVGAEALM RWNHPERGFL GAGDFLPFAE
ENGLIIPITD WMLEAICLDL LDWNAAGGEP VRLSLNLSPQ YLDRGDFFDK LKNALTLHHI
NASQIEVEVT ENICIHNPQT AIEQLNKLCQ LGVSVAIDDF GTGYSSLSYL HRFPIHTIKI
DRSFVMKIQN DNSQCPVVLA IISIAKGLSL NLVAEGVETQ VQERYLERSG CNTMQGYLYH
KPLSQKKMLA LLRVA
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