| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rfer_2337 |
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| Symbol | |
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| ID | 3962670 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodoferax ferrireducens T118 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007908 |
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| Strand | + |
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| Start bp | 2568727 |
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| End bp | 2570274 |
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| Gene Length | 1548 bp |
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| Protein Length | 515 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 637917153 |
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| Product | diguanylate cyclase with PAS/PAC sensor |
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| Protein accession | YP_523585 |
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| Protein GI | 89901114 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2199] FOG: GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTCCATCC GTCAAAACTC TCACCCCCCA ACGCAATCCG ATGGTCAAGA TTCCTTCGCC
AAGGCCGAGC ACATGATGGC CATTGCCATG GACAAGGGTT TGCACCGGTT TGAATGGATA
CACACCAGGG CCGACGGCAC GAACTTCGTC GCCGAGGTCA CGCTCTCGAT CGTCGAACTG
GAAAGCAGGC CCGTCATCTA TTGTGTCTGG CGCGACATCA CTGAACGTAA GCGCATCGAA
GAGACACTGC AACGGCAGAA CTACATACTG TCCGCCGTCA TCGAAAACTT CCCAGGCGGC
ATCTCACTGT TCGACGCTGA GCTGCGCCTG GCGGCGCACA ACGACCAGTT CAAGCAGTTG
CTCGATCTTC CCGATTCGCT GCTCGGCAAT CCCGGGGTGG GTTTCGAAGA CATCGCTCGC
TACAACACGG GTCGCGGCGA GTACGGCCCC GGTGACCCCA AGCAGCAGAT CGCAGCCATC
GTTGCCCGGG CAAGCCACTT TCAGGCCCAC AAATTCGAGC GAGTTCGCCC CAACGGAACG
GTGCTGGAGA TCCGTGGCAT GCCCCTGCCA GACGGCGGTT TCGTCAGCAC CTACATGGAT
ATCAGCGAGC GCAAGCTGGC CGACTCGCAG CAACGTATTG CCGCCACTGC CTTTGAATCT
CAGGAGGGCA TGTTCATCAC CGATGCGGCC GGCACGATCC TGCGCGTCAA CCGGGCCTTC
ACGGACATTA CCGGCTATAC GGCCGAAGCG GCCGTGGGTC AGAATTCGCG CCTGCTCAAA
TCTGGCAGAC ACGACACAGC CTTTTATGCT GCCATGATGG ACAGCCTGCG ATGTAGCGGC
AGATGGCAGG GAGGACTCTG GAATCGGCGC AGGAACGGCG AGGTCTACCC CGAATGGCTC
AGGATCACCG CGGTCAAGGG CGACGCGGGA GAAATCACCA ACTACGTTGC CACCTTAACC
GACATCACCG TGCGCAAGCG GGCGCAAGAC GAAATCAGGA ATCTGGCGTT TCATGACGCG
CTGACTCAAC TGCCGAACCG TCGTCTTCTC AGCGACCGCC TGAGCCAGGC CCTGGCAGCG
AGCAAGCGCA GTGCCTGTTA TGGCGCATTG ATGTTTCTTG GTTTGGACAA CGTCAAGCCG
CTCAATGACA CGCACGGGCA TGAGGTGGGC GATTTGCTGC TGGTTGAGGC GGCGGATCGA
CTCACGCGGT GTGTACGTGA AATAGACACT GTTGCGCGCT TCGGCGGCGA TGAGTTTGTG
GTGATGTTGG TCGATTTGGA GGTGAATCTG CCGCAAGCGG CCCTGCAGGC CCGGTGTATT
GCTGAAAAAG TCCGCGTTGC ATTGGCTCCG CCCTATCTGC TGACTCTCAA TCACGGGTCG
AACACCAACA CCACCGTTGA GCATCATTGC ACGGTGAACA TCGGTGTGGC GTTGTTCATG
GACCACAAAG GCAGCACAGA CGACTTCCTG AAGTGGGCTG ATATCGCAAT ATACAAAGCC
AAAGAAGCGG GGCGCAATGC CGCTGCGTTC CATGACTGCG ACGCATGA
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| Protein sequence | MSIRQNSHPP TQSDGQDSFA KAEHMMAIAM DKGLHRFEWI HTRADGTNFV AEVTLSIVEL
ESRPVIYCVW RDITERKRIE ETLQRQNYIL SAVIENFPGG ISLFDAELRL AAHNDQFKQL
LDLPDSLLGN PGVGFEDIAR YNTGRGEYGP GDPKQQIAAI VARASHFQAH KFERVRPNGT
VLEIRGMPLP DGGFVSTYMD ISERKLADSQ QRIAATAFES QEGMFITDAA GTILRVNRAF
TDITGYTAEA AVGQNSRLLK SGRHDTAFYA AMMDSLRCSG RWQGGLWNRR RNGEVYPEWL
RITAVKGDAG EITNYVATLT DITVRKRAQD EIRNLAFHDA LTQLPNRRLL SDRLSQALAA
SKRSACYGAL MFLGLDNVKP LNDTHGHEVG DLLLVEAADR LTRCVREIDT VARFGGDEFV
VMLVDLEVNL PQAALQARCI AEKVRVALAP PYLLTLNHGS NTNTTVEHHC TVNIGVALFM
DHKGSTDDFL KWADIAIYKA KEAGRNAAAF HDCDA
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